ggKbase home page

DolZOral124_scaffold_357

Search features with annotation key words

Displaying items 31-60 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_357_31
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22163..23056
-----------------
DNA (894bp)
protein (298aa)
ylyB1; putative RNA pseudouridine synthase YlyB (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacteriu
Pseudouridine synthase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PT53_CLOSD
DolZOral124_scaffold_357_32
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23308..24222
-----------------
DNA (915bp)
protein (305aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CF90_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azo
ribosome biogenesis GTP-binding protein YlqF
DolZOral124_scaffold_357_33
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24223..25011
-----------------
DNA (789bp)
protein (263aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000255|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000255|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00052};; TaxID=203119 species="Bacteria; Firmicutes; Clos
Ribonuclease HII n=1 Tax=Clostridium thermocellum BC1 RepID=U4MT84_CLOTM
DolZOral124_scaffold_357_34
unknown

Not on your lists

25111..26553
-----------------
DNA (1443bp)
protein (481aa)

This feature has no annotations

DolZOral124_scaffold_357_35
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26564..26839
-----------------
DNA (276bp)
protein (92aa)
Putative FlhB domain protein n=1 Tax=Eubacteriaceae bacterium OBRC8 RepID=J5WFK2_9FIRM
type iii secretion exporter
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_357_36
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

26873..27226
-----------------
DNA (354bp)
protein (118aa)
UPF0102 protein DEFDS_0180 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAR8_DEFDS
hypothetical protein
UPF0102 protein DEFDS_0180 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfurica
DolZOral124_scaffold_357_37
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27290..27523)
-----------------
DNA (234bp)
protein (78aa)
50S ribosomal protein L28 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RL28_ALKMQ
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azor
DolZOral124_scaffold_357_38
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27810..28754
-----------------
DNA (945bp)
protein (315aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YVX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM39848.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
conserved membrane protein of unknown function
DolZOral124_scaffold_357_39
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28860..29222
-----------------
DNA (363bp)
protein (121aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRV5_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR48923.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (stra
DolZOral124_scaffold_357_40

Not on your lists

29235..30908
-----------------
DNA (1674bp)
protein (558aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F336_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phosphatase
DolZOral124_scaffold_357_41
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31003..33114
-----------------
DNA (2112bp)
protein (704aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LXT3_CLOCD
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:KGG81128.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter az
DolZOral124_scaffold_357_42
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33182..33739
-----------------
DNA (558bp)
protein (186aa)
RNA methyltransferase, RsmD family n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E3N9_9FIRM
RNA methyltransferase RsmD family {ECO:0000313|EMBL:KDR94044.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium
methyltransferase
DolZOral124_scaffold_357_43
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33739..34227
-----------------
DNA (489bp)
protein (163aa)
coaD; Phosphopantetheine adenylyltransferase CoaD (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZH0_CLOA9
DolZOral124_scaffold_357_44
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

34227..34778
-----------------
DNA (552bp)
protein (184aa)
Archaeal/vacuolar-type H+-ATPase subunit H n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8R9V0_THETN
NtpF; vacuolar-type H+-ATPase subunit H
Archaeal/vacuolar-type H+-ATPase subunit H {ECO:0000313|EMBL:AAM24704.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" s
DolZOral124_scaffold_357_45
Clostridium sp. K25, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34790..36052)
-----------------
DNA (1263bp)
protein (421aa)
UPF0348 protein CbC4_1484 n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A9N3_CLOBO
UPF0348 protein Z957_01080 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1443109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. K25.;"
hypothetical protein
DolZOral124_scaffold_357_46
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36267..37463
-----------------
DNA (1197bp)
protein (399aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia;
acetate kinase n=1 Tax=Dehalobacter sp. E1 RepID=UPI00030E8E81
acetate kinase
DolZOral124_scaffold_357_47
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37544..38116
-----------------
DNA (573bp)
protein (191aa)
Ribosomal protein L32 family protein n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KWP8_CLOBM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM69057.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
DolZOral124_scaffold_357_48
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists


38119..38295
-----------------
DNA (177bp)
protein (59aa)
50S ribosomal protein L32 n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EYY6_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
50S ribosomal protein L32
DolZOral124_scaffold_357_49
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

38806..40191
-----------------
DNA (1386bp)
protein (462aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00036E3068
YidE/YbjL duplication
YidE/YbjL duplication {ECO:0000313|EMBL:ADO83308.1}; Flags: Precursor;; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (st
DolZOral124_scaffold_357_50
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40228..40557
-----------------
DNA (330bp)
protein (110aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLS9_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW17996.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain Oh
DolZOral124_scaffold_357_51
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

40591..42087
-----------------
DNA (1497bp)
protein (499aa)
succinate CoA transferase (EC:3.1.2.1)
Succinate CoA transferase {ECO:0000313|EMBL:ADO84486.1}; EC=3.1.2.1 {ECO:0000313|EMBL:ADO84486.1};; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" sourc
Succinate CoA transferase n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HCU1_ILYPC
DolZOral124_scaffold_357_52
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42197..42601
-----------------
DNA (405bp)
protein (135aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLT4_ALKOO
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:KJS18963.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
glyoxalase/bleomycin resistance protein/dioxygenase
DolZOral124_scaffold_357_53
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42624..44162
-----------------
DNA (1539bp)
protein (513aa)
Carboxyl transferase YqjD n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PXA2_CLOSD
yqjD; Carboxyl transferase YqjD
Carboxyl transferase YqjD {ECO:0000313|EMBL:CBH21067.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium stickland
DolZOral124_scaffold_357_54

Not on your lists

44177..44581
-----------------
DNA (405bp)
protein (135aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacteriu
Oxaloacetate decarboxylase gamma chain n=1 Tax=uncultured bacterium RepID=K1ZLK3_9BACT
sodium pump decarboxylase, gamma subunit
DolZOral124_scaffold_357_55
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44596..44991
-----------------
DNA (396bp)
protein (132aa)
Biotin-requiring enzyme n=5 Tax=Selenomonas RepID=E7N3H8_9FIRM
biotin/lipoyl attachment domain-containing protein
Tax=BJP_IG2103_Clostridiales_50_15
DolZOral124_scaffold_357_56
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

45022..46263
-----------------
DNA (1242bp)
protein (414aa)
glutaconyl-CoA decarboxylase beta subunit (EC:4.1.1.3 4.1.1.70)
Glutaconyl-CoA decarboxylase beta subunit {ECO:0000313|EMBL:ADO82089.1}; EC=4.1.1.3 {ECO:0000313|EMBL:ADO82089.1};; EC=4.1.1.70 {ECO:0000313|EMBL:ADO82089.1};; Flags: Precursor;; TaxID=572544 species=
Glutaconyl-CoA decarboxylase beta subunit n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HAT8_ILYPC
DolZOral124_scaffold_357_57
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

46472..48613
-----------------
DNA (2142bp)
protein (714aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit n=4 Tax=Pelosinus fermentans RepID=I8RC40_9FIRM
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:EIW16663.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus ferm
DolZOral124_scaffold_357_58
bacterium UASB270, Bacteria

Not on your lists

48606..50792
-----------------
DNA (2187bp)
protein (729aa)
Methylmalonyl-CoA mutase, large subunit n=6 Tax=Veillonella RepID=D1BPY1_VEIPT
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:GAK57507.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
methylmalonyl-CoA mutase large subunit
DolZOral124_scaffold_357_59
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

50795..51916
-----------------
DNA (1122bp)
protein (374aa)
LAO/AO transport system ATPase n=1 Tax=Pelosinus fermentans JBW45 RepID=I9NSR9_9FIRM
LAO/AO transport system ATPase
LAO/AO transport system ATPase {ECO:0000313|EMBL:AJQ28775.1}; TaxID=1192197 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JB
DolZOral124_scaffold_357_60
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

52107..52622
-----------------
DNA (516bp)
protein (172aa)
Transcriptional regulator, CarD family n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CCQ2_9CLOT
Transcriptional regulator, CarD family {ECO:0000313|EMBL:EOD00065.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisaliniba
CarD family transcriptional regulator
Displaying items 31-60 of 85 in total

View Taxonomy