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DolZOral124_scaffold_780

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_780_1
Methanolacinia petrolearia, Methanolacinia, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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41..808
-----------------
DNA (768bp)
protein (256aa)
ABC transporter related protein n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RG28_METP4
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADN36263.1}; TaxID=679926 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia.;" source="Methano
DolZOral124_scaffold_780_2
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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929..1552
-----------------
DNA (624bp)
protein (208aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CEF4_9CLOT
Holliday junction DNA helicase subunit RuvA
DolZOral124_scaffold_780_3
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1635..2672
-----------------
DNA (1038bp)
protein (346aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridia
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CVK2_9CLOT
Holliday junction DNA helicase RuvB
DolZOral124_scaffold_780_4
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2692..4467
-----------------
DNA (1776bp)
protein (592aa)
SpoIID/LytB domain n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGP1_ALKOO
SpoIID/LytB domain-containing protein
SpoIID/LytB domain {ECO:0000313|EMBL:ABW19264.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlan
DolZOral124_scaffold_780_5
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4615..5694
-----------------
DNA (1080bp)
protein (360aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CPR9_9CLOT
DolZOral124_scaffold_780_6
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5822..6934
-----------------
DNA (1113bp)
protein (371aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
queuine tRNA-ribosyltransferase n=1 Tax=[Clostridium] glycolicum RepID=UPI00035E8793
tgt; queuine tRNA-ribosyltransferase
DolZOral124_scaffold_780_7
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7184..7516
-----------------
DNA (333bp)
protein (111aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PLP7_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHO84730.1}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium
preprotein translocase subunit YajC
DolZOral124_scaffold_780_8
Peptostreptococcaceae bacterium ACC19a, Clostridiales, Clostridia, Firmicutes, Bacteria

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7573..7728
-----------------
DNA (156bp)
protein (52aa)
Six-cysteine peptide SCIFF n=3 Tax=unclassified Eubacteriaceae RepID=J4WI41_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHL14504.1}; TaxID=796937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium ACC19a.;"
DolZOral124_scaffold_780_9
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7816..9189
-----------------
DNA (1374bp)
protein (458aa)
Radical SAM domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQN2_ALKMQ
Radical SAM protein {ECO:0000313|EMBL:KJF28050.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
radical SAM domain-containing protein
DolZOral124_scaffold_780_10
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9246..10553
-----------------
DNA (1308bp)
protein (436aa)
Protein translocase subunit SecD n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PRC6_CLOSD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
Protein-export membrane protein SecD precursor
DolZOral124_scaffold_780_11
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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10553..11449
-----------------
DNA (897bp)
protein (299aa)
Protein-export membrane protein SecF n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AU28_9CLOT
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaero
secF; SecYEG protein translocase auxillary subunit
DolZOral124_scaffold_780_12
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11484..11867
-----------------
DNA (384bp)
protein (128aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z768_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KAJ53912.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.
hypothetical protein
DolZOral124_scaffold_780_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11885..14257
-----------------
DNA (2373bp)
protein (791aa)
Single-stranded-DNA-specific exonuclease {ECO:0000313|EMBL:CCL31017.1}; EC=3.1.-.- {ECO:0000313|EMBL:CCL31017.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoc
recJ; Single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridium difficile RepID=T3P6A6_CLODI rbh
DolZOral124_scaffold_780_14
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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14447..14965
-----------------
DNA (519bp)
protein (173aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000
Adenine phosphoribosyltransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXP6_THEOJ
DolZOral124_scaffold_780_15
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15006..17213
-----------------
DNA (2208bp)
protein (736aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQN9_ALKMQ
(P)ppGpp synthetase {ECO:0000313|EMBL:KJF28212.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
DolZOral124_scaffold_780_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17313..17765
-----------------
DNA (453bp)
protein (151aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1215059 species="Bacte
D-tyrosyl-tRNA(Tyr) deacylase n=190 Tax=Clostridium difficile RepID=DTD_CLOD6
DolZOral124_scaffold_780_17
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17772..18395
-----------------
DNA (624bp)
protein (208aa)
Beta-lactamase domain protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGM9_ALKOO
Beta-lactamase {ECO:0000313|EMBL:KJF28057.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
beta-lactamase domain-containing protein
DolZOral124_scaffold_780_18
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18476..18652)
-----------------
DNA (177bp)
protein (59aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TL98_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR46966.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (stra
DolZOral124_scaffold_780_19
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18918..20417
-----------------
DNA (1500bp)
protein (500aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB (EC:1.3.1.74)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000255|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=MIAB_ALKOO rbh
DolZOral124_scaffold_780_20
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20436..23078
-----------------
DNA (2643bp)
protein (881aa)
DNA mismatch repair protein MutS n=7 Tax=Clostridium thermocellum RepID=MUTS_CLOTH rbh
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000255|HAMAP-Rule:MF_00096}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium the
DolZOral124_scaffold_780_21
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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23208..25292
-----------------
DNA (2085bp)
protein (695aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABG6_9FIRM rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intesti
mutL; DNA mismatch repair protein
DolZOral124_scaffold_780_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25289..26218
-----------------
DNA (930bp)
protein (310aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
miaA; transfer RNA delta(2)-isopentenylpyrophosphatetransferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Clostridium difficile CD69 RepID=T3A6S3_CLODI
DolZOral124_scaffold_780_23
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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26222..27292
-----------------
DNA (1071bp)
protein (357aa)
threonine aldolase (EC:4.1.2.5)
Putative L-allo-threonine aldolase n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2D033_9FIRM
Putative L-allo-threonine aldolase {ECO:0000313|EMBL:ERI90155.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
DolZOral124_scaffold_780_24
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27542..28669
-----------------
DNA (1128bp)
protein (376aa)
Phage integrase family protein n=2 Tax=Clostridium bifermentans RepID=T4VD82_CLOBI
Phage integrase family protein {ECO:0000313|EMBL:EQK42820.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] b
tyrosine recombinase
DolZOral124_scaffold_780_25
unknown

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comp(28875..30239)
-----------------
DNA (1365bp)
protein (455aa)

This feature has no annotations

DolZOral124_scaffold_780_26
unknown

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comp(30350..30691)
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

DolZOral124_scaffold_780_27
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30862..31488
-----------------
DNA (627bp)
protein (209aa)
LexA repressor (EC:3.4.21.88)
LexA repressor {ECO:0000255|HAMAP-Rule:MF_00015}; EC=3.4.21.88 {ECO:0000255|HAMAP-Rule:MF_00015};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;
LexA repressor n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=LEXA_ALKOO
DolZOral124_scaffold_780_28
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31661..33748)
-----------------
DNA (2088bp)
protein (696aa)
Methyl-accepting chemotaxis protein signaling domain protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7STV0_CLOSG
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KAJ50951.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorp
methyl-accepting chemotaxis protein
DolZOral124_scaffold_780_29
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33767..35026)
-----------------
DNA (1260bp)
protein (420aa)
Aluminium resistance family protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TR72_ALKMQ
Aluminum resistance protein {ECO:0000313|EMBL:KDR95252.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] lito
aluminium resistance family protein
DolZOral124_scaffold_780_30
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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35753..36946
-----------------
DNA (1194bp)
protein (398aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KJF28804.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KJF28804.1};; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
aspartate aminotransferase (EC:2.6.1.1)
Aminotransferase, class I and II n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRF2_ALKMQ
Displaying items 1-30 of 46 in total

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