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ar4r2_scaffold_9345_5

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: 1523..2071

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNR6_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 64.4
  • Coverage: 177.0
  • Bit_score: 237
  • Evalue 1.10e-59
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EIJ33009.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source=" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.4
  • Coverage: 177.0
  • Bit_score: 237
  • Evalue 1.60e-59
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 48.0
  • Coverage: 179.0
  • Bit_score: 165
  • Evalue 1.20e-38

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGGAATCGCAACCACTGAACGAACTGCTGATCCGCAGTGGACAAAGAGAAGCCGCAGCATTCCGCCAATTGTACGATGCCGCCTCCCCGCGCCTATTCGCGGTGTGCAAACGCCTGTTGCGTGATGAAGCACTCGCGGAAGATGTGTTGCAGGAAGGTTTTGTCAAAATTTGGCATCATGCCGCGCAATTCTCGGTCAGCAAAGCCAGTGCGATGACGTGGATGACCACTATCGTGCGCAATCAGGCACTGGACAAACTCCGGCAAACCAAAGCTCGCCCGGAAACGCTGGGGGATGTGGAATATGAAACCCTAGAGTTTGCCTCACTGGAACCGGGGCCGGATGCCTTGCAGCAAATGGGTGAGGATGCCCATCGCTTGATGCACTGCCTCGACCAGCTCAAACCGGAACAGCGCGAGTGCATCCTGCAAGCCTTTTTTCACGGGCAAACCCATGAGGAACTTGCCCATACACTGGAAAAACCATTAGGGACGGTGAAAGCGTGGATACGTCGTGGACTGGAACAACTCAAGGGGTGCTTACAATGA
PROTEIN sequence
Length: 183
MESQPLNELLIRSGQREAAAFRQLYDAASPRLFAVCKRLLRDEALAEDVLQEGFVKIWHHAAQFSVSKASAMTWMTTIVRNQALDKLRQTKARPETLGDVEYETLEFASLEPGPDALQQMGEDAHRLMHCLDQLKPEQRECILQAFFHGQTHEELAHTLEKPLGTVKAWIRRGLEQLKGCLQ*