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gwa2_scaffold_17622_13

Organism: GWA2_CP_71_10_partial

partial RP 33 / 55 MC: 1 BSCG 29 / 51 MC: 1 ASCG 5 / 38 MC: 2
Location: 11679..12260

Top 3 Functional Annotations

Value Algorithm Source
putative RNA polymerase ECF-subfamily sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Actinobacteria_67_10_curated UNIPROT
DB: UniProtKB
  • Identity: 74.7
  • Coverage: 190.0
  • Bit_score: 264
  • Evalue 9.80e-68
ECF subfamily RNA polymerase sigma-24 factor KEGG
DB: KEGG
  • Identity: 43.8
  • Coverage: 185.0
  • Bit_score: 123
  • Evalue 5.40e-26
RNA polymerase, sigma-24 subunit, ECF subfamily similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 120
  • Evalue 3.00e+00

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Taxonomy

RBG_16_Actinobacteria_67_10_curated → Acidimicrobiia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGGAACAGGGCATCGCCGGCGAGTTGTGCGCACGGATGGCGGCCGATCTGGACGCTGCGTTTCCCGATCTCGTCGTTCAACACCAGCACCTGGTGTTCCGTGTAGCGCTGCGGGTGGTCGGTGACAGCGCCAGCGCCGAGGATGTCGCCCAGGAGGTCTTCGTCCGAGCGTATCGGACGTTGGCGAGGTACCCAGCAGAGCGGGTCAGGGTTCTTCGCCTGCGCCCATGGCTGGGGCGGATGACGCTCAACCTGGCGCGCAACGCGATCCGCGGCTGGCGCGCCACGACCGACATCGGCGCCCTCGCCCACCACCCTCAGGCACCCGACGACAACCCGCTCCAGCTCGTCACTCGCGACGACGAGCGGCGGATGTGGGCGCGATTGCTGGCCGGTCTCCCGCAGCGCTACCGCCTGGCGGTCGCCCTGCGCCACGTCGACGGCCTGTCCTATGCCGAGCTGGCCGAGACGCTCGGCCGGCCGCTGGGGAGCGTCAAATCGGATGTCCACCGCGGCACGGCCCTGCTGCGCGCCGCATATGACGCAGAACAACGCGCGCTCGCGCGCCAGGAGGCAGTCTGA
PROTEIN sequence
Length: 194
MEQGIAGELCARMAADLDAAFPDLVVQHQHLVFRVALRVVGDSASAEDVAQEVFVRAYRTLARYPAERVRVLRLRPWLGRMTLNLARNAIRGWRATTDIGALAHHPQAPDDNPLQLVTRDDERRMWARLLAGLPQRYRLAVALRHVDGLSYAELAETLGRPLGSVKSDVHRGTALLRAAYDAEQRALARQEAV*