ggKbase home page

gwf1_scaffold_95_36

Organism: GWF1_OD1_39_37

near complete RP 43 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(29442..30008)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000313|EMBL:KKS35675.1}; TaxID=1618952 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWE2_42_14.;" UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 188.0
  • Bit_score: 375
  • Evalue 5.00e-101
ECF subfamily RNA polymerase sigma-24 subunit KEGG
DB: KEGG
  • Identity: 36.1
  • Coverage: 180.0
  • Bit_score: 113
  • Evalue 5.50e-23
RNA polymerase sigma factor similarity UNIREF
DB: UNIREF90
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 113
  • Evalue 6.00e+00

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Parcubacteria bacterium GW2011_GWE2_42_14 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGAGAAAAGACGATGAACAATTGGTTTCTAACTACCTAGAGGGGGATGACCGGGCCCTGGCTATTCTTGTAGACCGTTATCTTGTCGATGCTTATAATTTTGCCTTTAAACTGACAAATGATAGGGGTGTTGCTGAAGACGTGACCCAGGAATCTTTTATGAAAGCATGGAAAAACATAAGGAAGTTTATTTCTGGTAACAGTTTTCGCTCCTGGCTTTTCAGTATTATTCACAACACATCAGTTGATTATCTAAGAAAAAGAAAAGAATTACCATTTTCAAGTTTTGAGAATGTTGAAGGTCATAACGCCCTGGTGTCTGCGCTGGCTGACCCTGGTCTTATTCAGGACGAATTACTTACAACAGCAGAAGATATGAGGTGTGTAGAGAATCTCTTGAATGAGCTCGGTCCGCAGTATCGTGAAGTTTTGACACTTCGACACACAAGTAATATGACCTTTGATGAGATTGGTAAATTGCTTAAGAGGCCAATTCATACAGTGAAAAGCCAGTATCGGAGGGGCATCGCTTCTCTACGGCGTTTATTGGATACTCAGACCGTATAA
PROTEIN sequence
Length: 189
MRKDDEQLVSNYLEGDDRALAILVDRYLVDAYNFAFKLTNDRGVAEDVTQESFMKAWKNIRKFISGNSFRSWLFSIIHNTSVDYLRKRKELPFSSFENVEGHNALVSALADPGLIQDELLTTAEDMRCVENLLNELGPQYREVLTLRHTSNMTFDEIGKLLKRPIHTVKSQYRRGIASLRRLLDTQTV*