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RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_52119_4

Organism: Candidatus Niyogibacteria bacterium RIFCSPHIGHO2_01_FULL_45_28

partial RP 38 / 55 BSCG 38 / 51 ASCG 9 / 38
Location: 2569..3759

Top 3 Functional Annotations

Value Algorithm Source
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 396.0
  • Bit_score: 765
  • Evalue 2.80e-218
RNA polymerase sigma factor id=2823713 bin=GWC1_OD1_38_17 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation similarity UNIREF
DB: UNIREF100
  • Identity: 63.5
  • Coverage: 414.0
  • Bit_score: 498
  • Evalue 4.50e-138
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 54.1
  • Coverage: 401.0
  • Bit_score: 393
  • Evalue 7.50e-107

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Taxonomy

R_OD1_45_48 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 1191
ATGCCAAAAAAACTTCAAACCAAAACCAAGAAGGCGGCAAAACGGCCGAAGTCCAAGTCTGTGAAGGCCGGACCCGCGAAAGCGCCGAAAGTTAAATCCGCGTCTAAGAAATTTTCGTCAAAAACCGAGTTTAGCGAGGAAAAAATCGCCGAGCTCATCAAGCGCGGAAAAATCCGCGGGTTTATAACTTACAGCGAAATCCTTTCCAAATTCCGTCACATTGAACGCAACGTCCTGTTTCTGGAGGACCTTTACAACCGTTTGCAGGAAGCCGGAATTGACGTTGTTGAAGGCAAAGACCTCCTGGAAGTTGAAGAAAAAAAACCGAAACAAGCCAAACTGCGGGAGGCATTAGAACATCTGGGAACTGACTCCGTCCAGATGTATCTTCGCGAGATAGGAAAAATCGCTCTTTTAACGGCCGATGAAGAAAAAGAGTTCGCCAAAAAAATAGAAAAGGGAGACGAAGACGCCAAAAACCGACTGGCTCTTGCCAACCTGCGCCTTGTCGTTTCTATTGCCAAGCGGTATGTGGGCCGTTCGCCTAATCTTACCCTTCTGGATCTGATTCAGGAAGGTAATATAGGCCTTTTTCGCGCGGTTGAAAAATTTGACTGGAGGCGCGGTTTTAAATTTTCCACTTATGCCACCTGGTGGATAAGGCAGGCCATAACCAGAGCTTTGGCCGATCAGGCGCGGACTATCCGCATCCCGGTTCATATGGTTGAGACAATTTCAAAATATCAGCAGGCCGTACGTAGGCTCACCCAGGATTTGGGGCGCGACCCGCTGGCAGAAGAAATTGCCGCCGAAATGGACGTGGAAGTCGAGAAAATACATCACATACAAAAAATATCCCAGGATACCATATCTATAGACGCTCCGGTGGGCGATGACGAAGAAGATTCGACTCTGGGCGAGTTTATTATGGATGAGACGATTTTGTCGCCGGAGCAGGAATCGGCCCGCAGGCTCTTAAAAGATCAGCTTCGCGAAATAATAACCGACCTGACGCCGCGGGAGCAGAAAATTTTAAAAATGCGTTTTGGCCTTGATGATTCAATAACTCACACTCTTGAGGAGGTGGGTAAGGAGTTCGGTGTCACTCGCGAGCGTATCCGGCAGATTGAAGCCAAGGCTTTGGAAAGAATCCGCCAGCACTCAAAATCCCACAAACTTGAGGGATATTAA
PROTEIN sequence
Length: 397
MPKKLQTKTKKAAKRPKSKSVKAGPAKAPKVKSASKKFSSKTEFSEEKIAELIKRGKIRGFITYSEILSKFRHIERNVLFLEDLYNRLQEAGIDVVEGKDLLEVEEKKPKQAKLREALEHLGTDSVQMYLREIGKIALLTADEEKEFAKKIEKGDEDAKNRLALANLRLVVSIAKRYVGRSPNLTLLDLIQEGNIGLFRAVEKFDWRRGFKFSTYATWWIRQAITRALADQARTIRIPVHMVETISKYQQAVRRLTQDLGRDPLAEEIAAEMDVEVEKIHHIQKISQDTISIDAPVGDDEEDSTLGEFIMDETILSPEQESARRLLKDQLREIITDLTPREQKILKMRFGLDDSITHTLEEVGKEFGVTRERIRQIEAKALERIRQHSKSHKLEGY*