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scnpilot_p_inoc_scaffold_1695_2

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 977..2395

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 93.9
  • Coverage: 472.0
  • Bit_score: 905
  • Evalue 2.70e-260
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ00_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 472.0
  • Bit_score: 905
  • Evalue 1.90e-260
  • rbh
rumA; 23S rRNA 5-methyluridine methyltransferase similarity KEGG
DB: KEGG
  • Identity: 76.4
  • Coverage: 475.0
  • Bit_score: 742
  • Evalue 6.00e-212

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1419
ATGTCCGCAGAGTCTCCTCCCCACACATCCCCCGCCTATCCCGACGGTTCGCTTGCCGTCGAGTCCCTGGACATCGAGGCCCAGGGCATCGCCCACCGCGCCGACGGCAAGGTGGTGTTCATCGAGGGTGCGCTGCCTTTTGAGCAGGTCAGCGTCTCCGTTCACCGCAAGAAGAACAACTGGGAAGCCGCCACCACCACGGCGGTGCACCGCGAGTCCTCGCAGCGCGTGCGCCCCCGCTGCCCGCATTTCGGCCTGCACGCGGGCGCCTGCGGCGGCTGCAAGATGCAGCACCTGCACCCGGCCGCGCAGGTGGCCATCAAGCAGCGCGTGCTGGAGGACAACCTCTGGCACCTGGGCAAGGTGCGCGCCGAGACCATCCTGCGCCCGATCGAAGGCCCCGCCTGGGGCTACCGCCACCGCGCGCGCCTGTCGGTGCGCCACGTGCACAAGAAGGGCGTGGTGTTGATCGGCTTTCACGAGCGCAAGAGCCGCTACGTGGCCGACATGGGCGTGTGCCTGGTGCTGCCACCGCACGTGAGCGACATGCTGGCGCCGCTGCGCGAGCTGATCTTCGAGATGGACGCGCGCGAAACCTGCCCGCAGATCGAACTGGCCTGCGGCGACAGCGTCACCGCGCTGGTGCTGCGCCACCTGGAGCCGCTGAGCGAGGACGACCTGTCGCGCCTGCGCGCCTTCGGCCAGCGGCATGGCGTGCAGTGGTGGCTTCAGGCCAAGGGCCCCGACACCGTGCGCCGGCTCGACGAGGGCGGCGAGGAACTGAGCTACGCCTTGCCCGAGTTCGGCGTGGTCATGCCCTTCAGGCCCACCGATTTCACGCAGGTCAATCCGTCGATCAACCGCGTGCTGGTGTCGCGCGCGCTGCGCCTGCTGGACGCGCGCGCCGACGAGCGCGTGATCGACTGGTTCTGCGGTCTGGGCAACTTCACCCTGCCCATCGCCACCACGGCACGCGAGGTGCTGGGCGTGGAGGGCAGCGAAGCCCTGGTCGCCCGCTCGCGCGAGAACCTGGCGCGCAATGGCGAAGGCCGGGCGCGGGCCTTCGCGCCCACGCGCTTTGCCGCCCGCAACCTGTTCGAGATGACGCCCGAGCAGTTGGTGGCCGATGGCGTGGCGCAGAAGTGGCTGGTCGATCCGCCCCGGGAAGGCGCCTTTGCGTTGGTCAAGGCATTGGCCGATCTGCACCAGCAACCCGAACTGCGGGGCGCTTGGACGCCCCCGACGCGCATCGTCTACGTGAGCTGCAACCCCGCCACGCTGGCGCGCGACGCGGGTCTTCTGGTGCACCAGGCCGGCTACCGCTGCGTGGCGGCGGGTGCGGTGAACATGTTCCCGCACACCGCGCATGTCGAGAGCATGGCCGTGTTCGAGTTGGCAGACGCTGAGTGCCCTGCGTAG
PROTEIN sequence
Length: 473
MSAESPPHTSPAYPDGSLAVESLDIEAQGIAHRADGKVVFIEGALPFEQVSVSVHRKKNNWEAATTTAVHRESSQRVRPRCPHFGLHAGACGGCKMQHLHPAAQVAIKQRVLEDNLWHLGKVRAETILRPIEGPAWGYRHRARLSVRHVHKKGVVLIGFHERKSRYVADMGVCLVLPPHVSDMLAPLRELIFEMDARETCPQIELACGDSVTALVLRHLEPLSEDDLSRLRAFGQRHGVQWWLQAKGPDTVRRLDEGGEELSYALPEFGVVMPFRPTDFTQVNPSINRVLVSRALRLLDARADERVIDWFCGLGNFTLPIATTAREVLGVEGSEALVARSRENLARNGEGRARAFAPTRFAARNLFEMTPEQLVADGVAQKWLVDPPREGAFALVKALADLHQQPELRGAWTPPTRIVYVSCNPATLARDAGLLVHQAGYRCVAAGAVNMFPHTAHVESMAVFELADAECPA*