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RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_42_100_rifcsphigho2_12_scaffold_304_17

Organism: Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_100

near complete RP 46 / 55 BSCG 48 / 51 ASCG 11 / 38
Location: 16697..18631

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=uncultured bacterium RepID=K2EIM6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 644.0
  • Bit_score: 1243
  • Evalue 0.0
rpoD; RNA polymerase sigma factor (sigma70) Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 644.0
  • Bit_score: 1243
  • Evalue 0.0
rpoD; sigma D (sigma 70) factor of RNA polymerase similarity KEGG
DB: KEGG
  • Identity: 65.7
  • Coverage: 671.0
  • Bit_score: 848
  • Evalue 1.10e-243

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Taxonomy

R_Alphaproteobacteria_42_30 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1935
ATGGCAAAGATGGCAAATTCAACCGCAGAAACACCGATTCTTGAGGAAAAGGAAAACAAAAATGCGGCCTTGGGAGAAAAGGCCGTTAAACAACTTCTCGCCCAAGGAAAGCAGCGTGGATACATCACCTATGAAGAACTCAATGAGACACTCCCCGAAGATAAATTAAGCTCCGAGCAAATCGAAGATATTATGTCTATGATTTCGGACATGGGAATTAACATTGTTGAAGATGAAGAGGCCGAGCAAGAGGACAAAACCAAGCAGACTGCAAAAGATAACGAGGAAGAAGAAACTGTTGAGGCGAGTGAAGTAGGAAAGACTGATGATCCCGTTCGCCTTTACCTGCGTGAAATGGGCAGTGTTGAGCTTCTTTCTCGCGAAGGGGAAATTGAAATCGCAAAACGTATTGAATCCGGTCGTGAAATGATGATTGGAGCTATTTGCGAAAGCCCTCTTACCATTCGCGCTATTGTGACGTGGCGCGATGCTCTCAACAAAGATCAAATGCTCTTAAGGGATATTATCGATATTGAATCAACCTATACCAATGGTCCCTCTGAAGAAGATGCGGACAATTTTGATGAAGAGGACGATCTTCTGGGAAATACACCTCTTGCGGAGGAGGAGATTGAAGAAGAAAGCGAGTATGATGATGAAAGTGCGGGTCTCTCAGTTTCAGCCATGGAAGACTCCCTTCGTCCCAAGGTCGTAGAAACATTTAACCAAATTGCTAAAACCTATACTCAGCTTCGCAAACTTCAAGAACAACGTTTGAAATCCCTGCAAAAAGGAGCCAAGGCTTCTGCTTCGACTGAAAAAAAATATGAGGAGATCCGCAAAGAACTCATTGAATTGATGGAGGGAATTCACCTCAACTCTTCTCGTATCGAGCAACTTGTTGAGCAACTTTATACCCTTAACCGTAAGCTCGTGGGCCTTGAAGGGCGTCTTTTACGTCTCGCTGAGGCTGCAGGCGTAAAGCGAGAAGTTTTCCTTGAGAACTATTATGGGAGCGAACTTGCTCCTGAATGGTTTGACAAACTTGAAACTCTATCCAGCAAGGGATGGAAGACTTTCCTAGACAAACATAAGGAAGAAGCGCTTACAATCCGCAAGATTATTGCTGAGGTTGCCGATGAATCCGGTCTCCCCATTTCTGAGTTTCGACGTATTCTAGGCACTGTCCAAAAGGGTGAGCGTGATTCCACGCGCGCCAAAAAGGAGATGATTGAAGCGAATCTTCGTCTGGTAATTTCCATCGCAAAGAAATATACAAACCGCGGCCTTCAATTCTTAGACCTCATTCAAGAGGGCAACATTGGCCTTATGAAGGCTGTGGATAAGTTCGAATACCGCCGCGGATACAAGTTTTCAACCTATGCAACCTGGTGGATTCGCCAAGCCATTACAAGGTCTATTGCCGATCAAGCCCGCACCATCCGTATCCCCGTTCATATGATTGAAACGATCAATAAGCTTGTCCGCACCTCGCGGCAAATGCTTCATGAAATTGGACGGGAGCCCACTCCTGAAGAGCTTGCCAATAAGCTCAAGATGCCCCTTGATAAAGTTCGTAAGGTCATGAAAATTGCTAAAGAGCCTATCAGTCTTGAAACCCCTATTGGAGATGAGGAAGATGGTCATTTGGGCGACTTTATTGAAGACAAAAATGCGGTTGTTCCTGTGGATGCAGCTGTGCTTTCAAACTTGCGCGAAACAACGACTCGTGTCCTTGCTAGCCTTACCCCTCGTGAGGAGCGCGTCTTGCGTATGCGCTTTGGTATCGGCATGAACACGGACCACACCTTAGAGGAAGTGGGACAACAGTTCGCTGTGACTCGTGAGCGCATCCGTCAAATCGAAGCGAAAGCCTTACGTAAGCTTAAGCATCCAAGTCGGTCAAGAAAATTGCGGAGTTTCTTAGACACGTAA
PROTEIN sequence
Length: 645
MAKMANSTAETPILEEKENKNAALGEKAVKQLLAQGKQRGYITYEELNETLPEDKLSSEQIEDIMSMISDMGINIVEDEEAEQEDKTKQTAKDNEEEETVEASEVGKTDDPVRLYLREMGSVELLSREGEIEIAKRIESGREMMIGAICESPLTIRAIVTWRDALNKDQMLLRDIIDIESTYTNGPSEEDADNFDEEDDLLGNTPLAEEEIEEESEYDDESAGLSVSAMEDSLRPKVVETFNQIAKTYTQLRKLQEQRLKSLQKGAKASASTEKKYEEIRKELIELMEGIHLNSSRIEQLVEQLYTLNRKLVGLEGRLLRLAEAAGVKREVFLENYYGSELAPEWFDKLETLSSKGWKTFLDKHKEEALTIRKIIAEVADESGLPISEFRRILGTVQKGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELANKLKMPLDKVRKVMKIAKEPISLETPIGDEEDGHLGDFIEDKNAVVPVDAAVLSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFAVTRERIRQIEAKALRKLKHPSRSRKLRSFLDT*