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cn_combo_scaffold_3141_16

Organism: CN-SCN_Unknown

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Location: comp(13785..15215)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding protein n=1 Tax=Pseudomonas mendocina RepID=UPI000363E890 similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 468.0
  • Bit_score: 458
  • Evalue 1.10e-125
DNA-binding protein {ECO:0000313|EMBL:EZH79133.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoal similarity UNIPROT
DB: UniProtKB
  • Identity: 54.9
  • Coverage: 472.0
  • Bit_score: 465
  • Evalue 9.30e-128
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 54.3
  • Coverage: 468.0
  • Bit_score: 457
  • Evalue 3.90e-126

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Taxonomy

Pseudomonas pseudoalcaligenes → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1431
ATGCCACGCCACTCCGAACGCCTCGTTTCCGCGCCCCTGGTGCGATCTGCGCTCCCTCTGCAGGAGCAGCTTTACCAGCGGATCCGGGCGGCGATCGCCAAGCGGCAGTTGACGCCTGGAGAGAAGCTGCCTTCGGTCCGCACTCTGGCGAGTGAGCTGGGCGTCGCGCGCGGGACCGTGGACATGACTTACGCCCGACTGGCCGGTGAAGGCTATCTCCTCTCCCGAGGTCCGGCCGGAACGATCGTCTCGCCCGACCTGCAGATCGAGGCCCCGCCGGCGCGTGCCGTGCGCAGCAGGCTGCAGCTCGCGCCCGAGGAGGAATCCGGCAGCGAGCCGCGGCCGTTCCAGTTGGGCTTGCCTGCCCTGGACGCGTTCCCGCGGGCTCTGTGGGCGCGACTCACTGCCCGCGCCGCCAAGCGACTGAGCGGCCGCGCCCTCGCCTACCCCGCCTATGCGGGTCTGCCCGATCTTCGCGACGCGATCGCATCGTACCTCGCCGTCTCGCGTGGCGTGCCGTGCCATGCAACACAGGTGATCATTACCGGCGGCTATCAAGATGCCCTCAGCCTGATGGCTCGCCTGCTCCTGCGGCCGGGCGACGGGGTGTGGTTCGAGGAGCCCGGCTACTTCCTCGCGCGCCACGCCCTGGAAGCGGCTTCGGCCCGGGTGCTGCCCATCCCTGTCGACGATCAGGGACTGGACGTAGACTTCGCGCAAGGGAACGCGCCCCGCGCCCGGCTCGCGGTCGTTACGCCCGCCCATCAGAGCGTGCTCGGCGTCGCCCTCTCATTGGCCCGCCGCCAGAGACTTCTTGCCTGGGCCAACGAGACGAACGCCTGGATCGTCGAAGACGATTACGACGGCGAGTTCCACTATGTCGGGCGAAAGCTTCCGGCGCTGAAGAGTCTCGATCTCGCCGACCGCGTGATCTACGCCGGCAGCTTCAGCAAGACCCTCTTCCCCGGCCTCTGCCTCGGCTATCTTGTCGTGCCTCACTCCCTGCTTCGGCAGGTCATCGAGGCGAAGCGCGCCACCGCCCACGGCCAACCCGTGTTGGGCCAGCGCGTCGTCGCCGACTTCCTTTCCGAAGGCCACTTCGGACGGCATCTCAAGCGCATGCGCGGCCTCTATGCCGCCCGGCGCGACGCTCTTGCCGCGGCGCTGCGCAGTACCTTCGGCGATCGGCTGGAAATGACCCTGCGCCCGGGCGGCATGCACCTGCTCGCCCACTTTCCCGAGCAGGGCAACGACGTCGACCTCGCGCGCCGTGCCTTTCGGCAGGGGTTCCTGCCGGCTGCGCTCTCCGCCCAGTATCTCGGACCCACGCGCGACTCGGGCCTGATGCTGAGCTTCACCAACATCGCGGAGGAACAGGCCCTCCCGCGGACGAAGGCCCTGGCGCGCGCCCTCGGAATGGGCGCGCGCTAG
PROTEIN sequence
Length: 477
MPRHSERLVSAPLVRSALPLQEQLYQRIRAAIAKRQLTPGEKLPSVRTLASELGVARGTVDMTYARLAGEGYLLSRGPAGTIVSPDLQIEAPPARAVRSRLQLAPEEESGSEPRPFQLGLPALDAFPRALWARLTARAAKRLSGRALAYPAYAGLPDLRDAIASYLAVSRGVPCHATQVIITGGYQDALSLMARLLLRPGDGVWFEEPGYFLARHALEAASARVLPIPVDDQGLDVDFAQGNAPRARLAVVTPAHQSVLGVALSLARRQRLLAWANETNAWIVEDDYDGEFHYVGRKLPALKSLDLADRVIYAGSFSKTLFPGLCLGYLVVPHSLLRQVIEAKRATAHGQPVLGQRVVADFLSEGHFGRHLKRMRGLYAARRDALAAALRSTFGDRLEMTLRPGGMHLLAHFPEQGNDVDLARRAFRQGFLPAALSAQYLGPTRDSGLMLSFTNIAEEQALPRTKALARALGMGAR*