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RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_23763_17

Organism: Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190

near complete RP 45 / 55 MC: 1 BSCG 44 / 51 ASCG 7 / 38
Location: comp(9888..11753)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000368A0EB similarity UNIREF
DB: UNIREF100
  • Identity: 66.6
  • Coverage: 622.0
  • Bit_score: 794
  • Evalue 6.20e-227
RNA polymerase, sigma 70 subunit, RpoD; K03086 RNA polymerase primary sigma factor Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 621.0
  • Bit_score: 1220
  • Evalue 0.0
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 66.3
  • Coverage: 624.0
  • Bit_score: 789
  • Evalue 7.40e-226

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Taxonomy

RLO_Gammaproteobacteria_47_11 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1866
ATGGAAAATACAGAACTTATTGAACAAGAAGACGATCAGTCACAATTAAAAGTACTTATCGCCAAAGGTAAGGAACAAGGCTTCCTGACCTATCATGAGGTCAATGATCACCTGCCTGATGACATTGTCGATCCCGAGCAGATCGAGGACATCATCAATATGATCAATGACATGGGCATCACCGTTTATGAGTCCCCGCCCGACCTCGAGATCATCATGACTGACAGCACCGAAGGACCGGATGAAGAGGCCGCTGCCGAAGCTGCTGCCGCACTTGCGAGTGTCGAAAGTGAGTTTGGCCGTACTACCGATCCGGTCCGCATGTATATGCGCGAAATGGGCACGGTAGACCTGCTTACCCGCGAAGGCGAGATCAAGATTGCAAAACGCATTGAAGAAGGCATTAACCAGATGCTGGAGGCGCTTGCCTGCTATCCGGGCACTATTGAAAGCCTGCTTAACAGCCATCATTCCATCACTAAGGAAGAACTCAAGCTGAGCGATATCATCATTGGCTTCAATGATACTGAGGAATATCCGGACAGTGGTCAATTGCCTATGAAAAATGATGCTGATGCTGAACCTGCAGCAGATGAGGATGAGGAAGATGCGGATGAAGATAATGACAATGATGATACGGATGATGAACCGGAGGCCATGCTGGATCCTGAAGAAGTACGGGTACACATTGAGGCAATTGAAAAGATCTACAACAAGCTGACACGCTCCATCAAACGTAATGGCCGCCATCACAAAAAATCGCAGGAACTACTGAATGAATTATGCCAGACATTCCTCAGCCTGAGATTGACACCAAAGTTTATTGACATCCTGACTAACAATGTCCGTAATCTTATCGAGATTATCCGTGGTGCAGAACGTAGCATTATGAATATTTGCGTTAAACGGTGCAAAATGCCGCGCAAGGAGTTTATTTCCTTATTCCCGGGTAATGAGACCAATATCCAGTGGACCAAGTCCCTGGCTAAATCACGTAGCAAGCCCTATGCAAAAAACATCAAGGAATTGCAGGATGAAATTATTGCAATCCAGGAAAAGCTCGGGCAATTGTTCAATGAAGAATTAACTATTACTGATATAAAGGAAATCAACCGACGGGTATCGATTGGTGAAGCAAAATCCCGCCGTGCAAAAAAGGAAATGGTAGAGGCCAACCTGCGACTGGTGATTTCAATCGCCAAAAAATATACCAACCGTGGTTTGTTGTTCCTCGATCTGATTCAGGAAGGTAACATCGGTTTGATGAAAGCGGTTGATAAATTTGAATACCGGCGCGGTTACAAGTTTTCGACTTATGCTACCTGGTGGATACGCCAGGCCATCACACGTTCGATCGCAGATCAGGCCAGGACCATCCGTATCCCGGTGCATATGATTGAAACAATCAATAAACTGAATCGCATATCACGGCAGATCCTGCAGGAGAAAGGCCGCGAGCCAACCCCCGAGGAACTGGCTGAAAAAATGGAAATGCCGGAAGAAAAGATCCGCAAGGTATTGAAAATTGCCAAAGAACCGATTTCGATGGAGACCCCGATTGGAGATGATGAAGATTCACATCTGGGTGACTTCATTGAGGACTTAAATATTCTTGCGCCCAGCGATTCAGCCGGGTTCGAAGGCTTACGCAGGACCACACGCGAAGCATTGGAAGGTCTGACACCACGTGAAGCTAAAGTATTACGCATGCGTTTCGGTATCAATATGAACACCGACCACACGCTGGAAGAGGTCGGCAAACAGTTCGATGTAACCCGTGAACGCATCCGTCAGATCGAAGCAAAGGCGCTCAGGAAACTGCGTCATCCTTCACGTTCTGAACAACTCAAAACCTTCCTGGATTAG
PROTEIN sequence
Length: 622
MENTELIEQEDDQSQLKVLIAKGKEQGFLTYHEVNDHLPDDIVDPEQIEDIINMINDMGITVYESPPDLEIIMTDSTEGPDEEAAAEAAAALASVESEFGRTTDPVRMYMREMGTVDLLTREGEIKIAKRIEEGINQMLEALACYPGTIESLLNSHHSITKEELKLSDIIIGFNDTEEYPDSGQLPMKNDADAEPAADEDEEDADEDNDNDDTDDEPEAMLDPEEVRVHIEAIEKIYNKLTRSIKRNGRHHKKSQELLNELCQTFLSLRLTPKFIDILTNNVRNLIEIIRGAERSIMNICVKRCKMPRKEFISLFPGNETNIQWTKSLAKSRSKPYAKNIKELQDEIIAIQEKLGQLFNEELTITDIKEINRRVSIGEAKSRRAKKEMVEANLRLVISIAKKYTNRGLLFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQEKGREPTPEELAEKMEMPEEKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDLNILAPSDSAGFEGLRRTTREALEGLTPREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKTFLD*