ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_2711_30

Organism: Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 25664..26626

Top 3 Functional Annotations

Value Algorithm Source
ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 320.0
  • Bit_score: 640
  • Evalue 1.40e-180
rluD; ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] id=12556576 bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 58.5
  • Coverage: 316.0
  • Bit_score: 355
  • Evalue 5.00e-95
pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 52.1
  • Coverage: 313.0
  • Bit_score: 299
  • Evalue 1.20e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 963
ATGCCGGGTCCAATCACGGACCCCACGACGAGCCACACCATCACGGTCACTGAGGACAGCGAGGGCACCCGGCTCGATCGATTCCTGGCTTCCGTCCTCCCGGGGCATTCGCGGTCCCAGATCCAGCGACTGATCAGAGAGGGTCAGGTGCACGTCGCTGGTCACGAGGCAAAAGCAAACCAGCCAGTCAGGGTCGGGCAATCGATCACCGTCACACTTCCAGAGCCGGTCGATCCGACTCCGCAGCCAGAAGCGCTGCCCCTTGCCATTCTCTATCAGGATCACGACGTCGTCGTGGTCGACAAACCGGCCGGGATGGTCGTCCATCCGGCGGCGGGACATGTGAGCGGGACGCTAGTGAACGCGCTGCTGCACCACCTCGACGACTTGAGCGGTATCGGCGGGGAGAAGCGTCCGGGAATCGTGCATCGGCTCGATCGCGGCACCTCGGGTCTGATGGTCGTCGCCAAGCACGACGCGGCGCACGAAGAACTGTCCAGGCAGTTCCGGGATCGAGAGGTCGAGAAGGAATACATCGCGCTCGTCTGGGGAACTGTTCAGGCGGGGCGGCGAATCGACGTGCCTATCGGGCGCGATCAGGCGAATCGCAAGAAAATGTCGGCGCGGGCGCGCCGCAGCCGCGAGGCGGTGACCCGCATCGTTCGCGCGGATCACCTGCGTGCCTTCACTCTGGTACGGGTCGCCATTCATACCGGCCGCACGCACCAGATTCGAGTCCACCTAAGCGCCATCGGTCATCCGGTCGTTGCCGATCCTTTGTACGGTGGGGTTCACCGCCGTGTGCCAGGCGACTTGCGGGCTGTCACACATCTCGAACGACCGTTCCTGCACGCGGCACGTCTGGCGTTTAAGCACCCCGGCGACGGGCGTCGCATGGAGTTCACGAGCGAGTTACCTGCCGATCTCCGGCAGGTGCTGGACGAACTGAAGGAGACGGCATGA
PROTEIN sequence
Length: 321
MPGPITDPTTSHTITVTEDSEGTRLDRFLASVLPGHSRSQIQRLIREGQVHVAGHEAKANQPVRVGQSITVTLPEPVDPTPQPEALPLAILYQDHDVVVVDKPAGMVVHPAAGHVSGTLVNALLHHLDDLSGIGGEKRPGIVHRLDRGTSGLMVVAKHDAAHEELSRQFRDREVEKEYIALVWGTVQAGRRIDVPIGRDQANRKKMSARARRSREAVTRIVRADHLRAFTLVRVAIHTGRTHQIRVHLSAIGHPVVADPLYGGVHRRVPGDLRAVTHLERPFLHAARLAFKHPGDGRRMEFTSELPADLRQVLDELKETA*