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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_36219_4

Organism: Burkholderiales bacterium RIFCSPLOWO2_12_FULL_67_210

near complete RP 46 / 55 MC: 3 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: 2326..3990

Top 3 Functional Annotations

Value Algorithm Source
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 554.0
  • Bit_score: 1082
  • Evalue 0.0
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor id=5082805 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 562.0
  • Bit_score: 908
  • Evalue 3.50e-261
sigma-54 (RpoN) similarity KEGG
DB: KEGG
  • Identity: 65.8
  • Coverage: 558.0
  • Bit_score: 678
  • Evalue 1.60e-192

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Taxonomy

R_Burkholderiales_67_14 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1665
ATGAAACAAGGCCTGTCGCTGCGCGTCTCCCAGCATCTGGCGCTCACGCCCCAGCTGCAGCAGTCGATCCGTCTGCTGCAGCTGTCCACGCTGGAGATGGCGCAGGAGGTCGAGCAGATGCTCGACGAGAACCCGTTTCTGGAGCGCACCGAAGAGCTCGCCGAACGCGAGGCGTTTGGTCTGGAGCAGATCGACGCGCCGGTGAGCGCGGGCGAGCAGATCGCCGAAGCCACGGTGGCGGCTGCCAGCGACCTGGCCCCGGCCGCCGAATTCGACGGCCCGTTGTCGCCTGCGTCGTCCACCGTGTCGCCGGTCGACGGCGGCGAAGGCGGTGAGGGCGAGGCGCTGGAGAGTCGGCTCGATGGCGCCGCGCCGATGGAAGAGAGCTGGGAAGGCGACGGCACGGTCGAGATGGCGCCCGATGACAGCGAGTGGGGCGGCGACGCGCCGCCGCGCAACAACAGCTCGTCGGGCGACGACGACGAAACCGCCAGCGCTGCCGACCTCGCGCGCGTGCCCGTCAGCCTGCAGGACCACCTGCACGACCAGGCCCGCTGCCTGCGCCTGAGCGACGAAGACAGCGCCGCGCTGTATTTCCTGATCGAGTCGCTCAACGACGACGGCTACCTCGAAGAGCGTCTGTCCGAGCTGGCCGGCGCCTGGTTGCGGCTCTCGGCCCCACCGGGCAAGCCGGTCGATCCGCAGGAGCACCTGGAGGAACTCGAAGCGCTCGAACAGCGCCTGGGCGTGGCGCTGCAGCTGCTGCAACACATGGAGCCTTCGGGTGTGGGCGCGCGCGACCTGGGCGAATGCCTGCGCCTGCAGATCCTGGAGCTGCGCAACAGCCCCGAGGCGCGGGCCGCGCTGGCCATCTGCAGCCAGCCGCTGGAGCTCATGGCCAAGCGCGACATCAAGCGCCTGTGCAACCTGTGTGGCCTGGACGACGCCACCGTGCGCGCCGCCCTGGCCTTGATCGCCCGGCTCGAACCCAAGCCCGGGCGCCGCTTCGTCGATGTCGAGCGCAACGTGGTCGTGCCCGACGTCATCGTCACCCGCGCCGGGCGCGGCTTCAAGGTCCAGCTCAACGCCGAGGTCATGCCGCGTCTGCGCGTGCACGACGTCTACGCCAATGCCATGCGGCAGAACCGGGGCGGGCGCGACAACGGCGGCGAAGCCGGCCACGCCGCCATGCAGCAGCGGCTGCAGGAAGCCCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTGTCCTCGGCCATCGTCGAGCGCCAGCGCAACTTCTTCATGCACGGCGAACTCGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAACTCGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCCTTCGGCACCTACGAGCTGAAGTATTTCTTCGGCTCCTCGCTCGGCACCGAAACCGGCGGCAACGCGTCGAGCACCGCGGTGCGCGCGCTGCTCAAGCAATTCATCGCCTCCGAAGAACCGGGCAAGCCGCTGTCGGACAACCAGCTCTCCGACCTGCTGCGCGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCCTTGCGCATCGCGCCAGCGAACCTGCGCAAAGCGCTGTGA
PROTEIN sequence
Length: 555
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERTEELAEREAFGLEQIDAPVSAGEQIAEATVAAASDLAPAAEFDGPLSPASSTVSPVDGGEGGEGEALESRLDGAAPMEESWEGDGTVEMAPDDSEWGGDAPPRNNSSSGDDDETASAADLARVPVSLQDHLHDQARCLRLSDEDSAALYFLIESLNDDGYLEERLSELAGAWLRLSAPPGKPVDPQEHLEELEALEQRLGVALQLLQHMEPSGVGARDLGECLRLQILELRNSPEARAALAICSQPLELMAKRDIKRLCNLCGLDDATVRAALALIARLEPKPGRRFVDVERNVVVPDVIVTRAGRGFKVQLNAEVMPRLRVHDVYANAMRQNRGGRDNGGEAGHAAMQQRLQEARWFIKNIQQRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGGNASSTAVRALLKQFIASEEPGKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANLRKAL*