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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_265101_1

Organism: Burkholderiales bacterium RIFCSPLOWO2_12_FULL_67_210

near complete RP 46 / 55 MC: 3 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: 3..545

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 subunit RpoD; K03086 RNA polymerase primary sigma factor id=5079413 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 97.2
  • Coverage: 181.0
  • Bit_score: 342
  • Evalue 1.90e-91
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co similarity UNIPROT
DB: UniProtKB
  • Identity: 97.2
  • Coverage: 180.0
  • Bit_score: 342
  • Evalue 2.60e-91
RpoD family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 95.6
  • Coverage: 180.0
  • Bit_score: 339
  • Evalue 4.50e-91

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Taxonomy

Hydrogenophaga sp. T4 → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 543
ATCCGCCAGGCCATCACGCGCTCGATCGCCGACCAGGCGCGCACGATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGATGAACCGCATCAGCCGCCAGCATCTGCAGGAGTTCGGTTTCGAACCCGATGCGTCGATCCTGGCCGAGAAGATGGAGATGCCGGAAGAGAAGATCCGCAAGATCATGAAGATCGCGAAGGAGCCGATCTCGATGGAAACCCCGATCGGTGACGACGACGATTCGCACCTGGGCGATTTCATCGAAGACCAGGCGAACACCGCGCCGATCGAGGCGGCGATGCAGGCCGGTCTGCGTGAGGTGGTGAAAGAGATTCTGGACAGCCTCACGCCGCGCGAAGCCAAGGTGCTGCGCATGCGTTTCGGCATCGAGATGTCCACCGACCACACGCTGGAAGAAGTGGGCAAGCAGTTTGACGTGACGCGCGAGCGCATCCGTCAGATCGAGTCGAAGGCGGTGCGCAAGCTCAAGCACCCCAGCCGTTCGGACAAGCTGCGCAGCTTCATCGACACGCTGTAA
PROTEIN sequence
Length: 181
IRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEMPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDQANTAPIEAAMQAGLREVVKEILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFIDTL*