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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_270621_2

Organism: Burkholderiales bacterium RIFCSPLOWO2_12_FULL_67_210

near complete RP 46 / 55 MC: 3 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: 930..1262

Top 3 Functional Annotations

Value Algorithm Source
triple helix repeat-containing collagen Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 110.0
  • Bit_score: 225
  • Evalue 3.80e-56
triple helix repeat-containing collagen id=5079085 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 70.8
  • Coverage: 120.0
  • Bit_score: 165
  • Evalue 4.30e-38
triple helix repeat-containing collagen similarity KEGG
DB: KEGG
  • Identity: 54.4
  • Coverage: 125.0
  • Bit_score: 116
  • Evalue 6.50e-24

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Taxonomy

R_Burkholderiales_67_14 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 333
ATGAACCGTTCACTCATGCTGCTGGCACTGATTTCCACCTTCGGCCTTGTGGCCTGCGACCGCGAACCGGTGGTCGTGAACACGCCGCCAGCCACCGTGGTGGTGCCCGGCCCCGCCGGTCCTGCCGGCGAAACCGGCGCCACCGGGTCCAGCGGCGCCACTGGCTCCACCGGGATGCAGGGCGATACTGGCAGTACCGGCGACACAGGTGCCACCGGCAGCACGGGCGACACCGGCGCCACGGGCAGCACCGGCGACACCGGTGAAACGGGCAAGACCGGCGGCACCACCCGAGTGATCGTGGTGCCTCCGCCCCCCGCGCCCACGAACTGA
PROTEIN sequence
Length: 111
MNRSLMLLALISTFGLVACDREPVVVNTPPATVVVPGPAGPAGETGATGSSGATGSTGMQGDTGSTGDTGATGSTGDTGATGSTGDTGETGKTGGTTRVIVVPPPPAPTN*