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RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_600_5

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: 4039..4611

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Pseudomonas sp. CFT9 RepID=S6GY90_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 190.0
  • Bit_score: 380
  • Evalue 8.60e-103
sigma-70 family RNA polymerase sigma factor Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 190.0
  • Bit_score: 382
  • Evalue 4.10e-103
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 96.3
  • Coverage: 190.0
  • Bit_score: 366
  • Evalue 4.70e-99

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Taxonomy

RLO_Pseudomonas_60_38 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGGCCGTTCCAGACGACTCACCCAGCGACGAATCGCTGCTGGCCCGCTACCGAACCGGTGACGCTGCCGCCTTCGAAGCTTTGTACAGCCGCCACCGCCAGGGCCTGTACCGCTTCCTCGTGTCCCTGTGCAACAAAGCCGAACTGGCCGAAGAAATCTACCAGGACACCTGGCTCAGCCTCATCCGCAGCACCACCCAGCCACAAGGCCGGGCGAGTTTTCGCACCTGGTTGTTCCAGATCGCCCGCAACCGCCTGATCGACCATTGGCGCAAGCACGGCATCCACAACCCCCTGCATGACAGCTACGATGAACAGCTGCACGCCCAGGCCGACGACAGCGACGGCCCCGAGCAGCAACTGACCCTCAGCCGCGACCAGGCGCGCCTCGACGCGGCCCTGCAAGCGTTGCCCGAAGACCAGCGCGAAGTGTTTCTGCTGCGCCTGCACGGCGACCTCGAAGTACCGCAAATCGCCACCCTCACCGGCGCCCCGCTGGAAACCGTAAAAAGCCGCTTGCGCTACGCCCTGCAAAAATTGCGGCGCCTGCTGGCCGAGGAGGTACCCGTATGA
PROTEIN sequence
Length: 191
MAVPDDSPSDESLLARYRTGDAAAFEALYSRHRQGLYRFLVSLCNKAELAEEIYQDTWLSLIRSTTQPQGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSDGPEQQLTLSRDQARLDAALQALPEDQREVFLLRLHGDLEVPQIATLTGAPLETVKSRLRYALQKLRRLLAEEVPV*