ggKbase home page

RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_26

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: 30733..31239

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein TssB1 n=5 Tax=Pseudomonas RepID=I2BRF5_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 168.0
  • Bit_score: 327
  • Evalue 7.70e-87
tssB1; type VI secretion protein TssB1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 168.0
  • Bit_score: 327
  • Evalue 1.40e-86
tssB1; type VI secretion protein TssB1 similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 168.0
  • Bit_score: 326
  • Evalue 6.30e-87

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Pseudomonas_60_38 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 507
GTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGTGCGCCTCGAGTGCAGATCGAGTACGACGTCGAGCTTTACGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTGATGGGCGTGATGGCCGACCTCGCCGGCAAGCCTGCCGAGCCGCTGGCCCCCGTGGCCGACCGCAAGTTCCTTGAGGTGGACGTCGACAACTTCGACTCACGCCTCAAGGCCATGCAGCCACGCGTCGCGTTCCACGTACCCAATGAGCTGACAGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATGGACGACTTCAGCCCGGCCGCCGTGGCCCGCAAGGTCGACTCCCTGAATCAGCTGCTCGAAGCCCGCACCCAATTGGCCAACCTGCTGACCTACATGGACGGCAAGACTGGCGCTGAAGAAATCATCATGAAGGCGATCAAGGACCCGGCATTGCTTCAGGCACTTGCCAGCGCGCCCAAGCCTGCAGGGGAGCAGTAA
PROTEIN sequence
Length: 169
VAKQSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPLAPVADRKFLEVDVDNFDSRLKAMQPRVAFHVPNELTGEGNLSLDITFESMDDFSPAAVARKVDSLNQLLEARTQLANLLTYMDGKTGAEEIIMKAIKDPALLQALASAPKPAGEQ*