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RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_28

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: 32894..33382

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion system effector Hcp1 n=4 Tax=Pseudomonas RepID=I2BNU1_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 162.0
  • Bit_score: 322
  • Evalue 1.80e-85
hcp1; type VI secretion system effector Hcp1 similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 162.0
  • Bit_score: 322
  • Evalue 5.10e-86
Type VI secretion system effector Hcp1 {ECO:0000313|EMBL:EIK61662.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Ps similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 162.0
  • Bit_score: 322
  • Evalue 2.50e-85

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Taxonomy

Pseudomonas fluorescens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 489
ATGGCTGTTGATATTTTCATCAAGATCGGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGATGTGTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTCGGCGGTGGCGGTGGCGCGGGCAAGGTGAATATCCAGGACCTGTCGCTGACCAAGTACGTCGACAAGGCTTCGCCCAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGACAAGGTCAAGCTGACCGTGCGCAAGGCCGGTGGCGAGAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGTCACCTCCTTGAGCACCGGCGGTTCGGGCAGCGATGATCGCCTGACCGAAAACGTCACCCTGAACTTCGCCCAAGTGATGGTCGACTACCAGCCGCAGAAAGCCGACGGCACCAAAGACGGCGGCGCCATCAAGTTTGGCTGGAACATTCGCTCCAACACCAAACGCTGA
PROTEIN sequence
Length: 163
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCASGKHIDKVKLTVRKAGGESQVEYMVINLEEVLVTSLSTGGSGSDDRLTENVTLNFAQVMVDYQPQKADGTKDGGAIKFGWNIRSNTKR*