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RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_30

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: 33967..35826

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein, VC_A0110 family n=1 Tax=Pseudomonas sp. CF150 RepID=S6KG92_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 619.0
  • Bit_score: 1242
  • Evalue 0.0
tssF1; type VI secretion protein TssF1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 619.0
  • Bit_score: 1243
  • Evalue 0.0
tssF1; type VI secretion protein TssF1 similarity KEGG
DB: KEGG
  • Identity: 99.5
  • Coverage: 619.0
  • Bit_score: 1240
  • Evalue 0.0

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Taxonomy

RLO_Pseudomonas_60_38 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1860
ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAATTGCACCACGTGCGCGAAAGCGCCGCCGAGTTCGCCAAGGAATACCCGAAGATCGCCAGTCGGCTGACCCTGTCCGGCATGGACTGCGCCGACCCGTACGTCGAACGTTTGCTTGAAGGCTTCGCCTATCTCACGGCCCGCGTGCAGCTCAAGCTCGACGCCGAGTACCCGACCTTCACCCACAACTTGCTGGAAATCGCCTACCCGCACTACTTGGCACCGACGCCGTCGATGACCGTAGTGCAATTGCAGACCGACCCCGATGAAGGCTCCCTGGCCGGCGGTTTCCCGCTGCCCCGGGACACGGTGCTGCGTGCCGCCCTGGGCCGTGAAACCCAGACCTGCTGCGAGTACCGCACCGCGCACCCGGTGACGCTGTGGCCGTTGCAGATCAGCAACGCCGAATATTTCGGCAACCCCGCCGCCGTGCTCGGACGCCTGGCCGCCAGCGAACCGAAAGCCAAGGCCGGCCTGCGCCTGACCCTGCGCACCGGTGCCGAGCTGCCGTTCAACAGCCTCGACCTGGATACCTTGCCGCTGTACCTGAGCGGCGCTGATGAACAACCGTTTCGCCTCTACGAACAACTGCTGGGCAATGCCTGCGCGGTGTTTGCGCGCCAGCCCGGTGGCGATTGGGTCGAGCGCCTGCCCCAGGGCGCGTTGCGCTCGCGGGGGTTCGATGATGCCGATGCGGCCATGCCGGTGGTGGCGCGGGCGTTCCAGGGCTATCGCCTGTTGCAGGAGTACTTCGCCCTGCCCCATCGCTTCCTGTTCGTTGAGTTCGCCGAGTTGAGACGCGCGGTCAAGCGGTGTGACGGCCAGGAGCTGGAACTGATCGTGTTGTTCGACCGCCACGAACCGAGCCTGGAAGGCAGTGTCGGCGCGGCGCAGTTCTTGCCGTTCTGCACGCCCGCCATCAACCTGTTCCCCAAGCGCGTGGACCGCATCCACTTGTCCGACCGGGTCAATGAACACCATGTGATCGCCGACCGTACGCGGCCGATGGATTTCGAGATTCACTCCTTGAGCGGCATTACCGGCCATGGCACCGGACCGGAGCAGCCGTTCTTGCCGTTCTACGCAGTGCGCGATCCGTCGCGCTATGGCCGCGACCAGGCGTATTACAGCGTGCGCCGCAAGCCACGGGTGCTGTCCAGCGACCAACGCCGCAATGGCCCACGCTCCACTTATGTGGGCAGTGAAACCTTCGTCAGCCTGGTGGACAGCCGCCAGGCGCCGTATCGCCATGACCTGCGCCAACTGGGCGTGACGGCGCTGTGCACCAACCGGGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGCGCGCCGGTACTGGCCGTGCGATGCGTCGCCGGGCCAAGCCGCCCACGTGCCAGCCACGCACATGACGCCAAGGCCTGGCGCCTGATCAGCCAGTTGTCGCTCAACTACCTCTCCTTGAGCGAACAGGGCCAGGGCGCCGGCGCCTTGCGCGAACTGCTGCGCCTGTACGGCGACAGCAATGACGCCGCCCTGCAATTGCAGATCGAAGGCCTGCGCGAAGTCAGCAGCAAGGCGGTGACCCGACGCCTGCCGATGCCTGGCCCGATTGTGTTTGGCCGCGGCCTGGAAATCACCTTGGAGTTCGACGAAAACGCGTTTCGCGGCACCGGCGTGTTCCTGCTCGGTGCAGTGCTGGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCGGACGGCGTCCGACCCTGTGA
PROTEIN sequence
Length: 620
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPDEGSLAGGFPLPRDTVLRAALGRETQTCCEYRTAHPVTLWPLQISNAEYFGNPAAVLGRLAASEPKAKAGLRLTLRTGAELPFNSLDLDTLPLYLSGADEQPFRLYEQLLGNACAVFARQPGGDWVERLPQGALRSRGFDDADAAMPVVARAFQGYRLLQEYFALPHRFLFVEFAELRRAVKRCDGQELELIVLFDRHEPSLEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHSLSGITGHGTGPEQPFLPFYAVRDPSRYGRDQAYYSVRRKPRVLSSDQRRNGPRSTYVGSETFVSLVDSRQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVLAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLSLSEQGQGAGALRELLRLYGDSNDAALQLQIEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVLERFLARYVSINSFTETVIRTTERGEIMRWKAKPGRRPTL*