ggKbase home page

RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_776_26

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(27932..28951)

Top 3 Functional Annotations

Value Algorithm Source
Putative type III secretion effector protein n=1 Tax=Pseudomonas fluorescens SS101 RepID=I4K7M1_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 341.0
  • Bit_score: 617
  • Evalue 7.50e-174
type III secretion effector protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 339.0
  • Bit_score: 708
  • Evalue 4.50e-201
type III secretion effector protein similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 339.0
  • Bit_score: 702
  • Evalue 5.00e-200
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Pseudomonas_60_38 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1020
ATGTCGGTATCGATGTTGGATACACCCGTCTCTGCTTCATCAACGCCTGACCTTTCACAGGCCAGCGCCAAGGCCGAGGTCAAAAACACGCGCCAGGCTGCACCTTCCTTCAAGGGCCAGAATGCTGCCCATGTGAATTTTCAATCGGGGGACAACAAAGCCGGGCCGGTATTCGGTAACCCCCAGGCACCCACCTCCGCAGCTGACGTGCGTGGACATCACCACAGACCACCGGCGATGCAGAATTTCCTGGGCCAACTCCCGCACTGGATCAGTCATTGGTTCTTCGGACATCGGCCGTCTATGCATCCTGGCTGTGGGCATCCGCCGCCAAAGCCGAACCCAGGTTGCAGCAACCCGCCACCCAGGCCGAACCCCATTGGGAGTAATCCGCCACCGAGGCCGGACCCCACTGCAGGTCGGCCGTATCCGCCCGCCCCCGGCAGGCCTGATCCGCAGTACTCGCTGAAAAATAGAGAAGAGCTGGCGCAGCAGTTGCGCGATAACTTCAATGCCTTCAGAGACCCGAAGAACCCTGGTTCCATTAGCGTTGACAGCATTCTTGCAATGGCAAAAAGAGGGTGGTCGCCCAACCCCGTCATGAACGAGAACATTCGCCTGGCCAATGAACTGCTACGACGTCCGGAACTGATGGCCGCATTGGACCGGCACGGTTCCACGGGCGCTTTGGATGGCCTGATCGACCGGCACAGCCTGAACGCGGTAATCAAAGGAGAAAACTACTTCAAGTACAAGAGCGACAAGGAACTGGCCGGTGAGCTGCTTGAGCATTTCGACGAGTTGAAAAACGGGAGCGGGGGCTCAAGCCTTAAAATCCGCGACCTGAAAAAGTGGGCCTGCCAGCCACTTACCGGCGACGCAGCCAAGGACCATCTGATTCAGTTATCCCAGGAATTAATACGCAAGCGCAGTGATCTGCTGGAGAAAATGGATAACCGCGCCAGTAAAGATGACGACGGGAAAATCAGCCGTACAGGACTGTACTTGTTGTCCCGCTGA
PROTEIN sequence
Length: 340
MSVSMLDTPVSASSTPDLSQASAKAEVKNTRQAAPSFKGQNAAHVNFQSGDNKAGPVFGNPQAPTSAADVRGHHHRPPAMQNFLGQLPHWISHWFFGHRPSMHPGCGHPPPKPNPGCSNPPPRPNPIGSNPPPRPDPTAGRPYPPAPGRPDPQYSLKNREELAQQLRDNFNAFRDPKNPGSISVDSILAMAKRGWSPNPVMNENIRLANELLRRPELMAALDRHGSTGALDGLIDRHSLNAVIKGENYFKYKSDKELAGELLEHFDELKNGSGGSSLKIRDLKKWACQPLTGDAAKDHLIQLSQELIRKRSDLLEKMDNRASKDDDGKISRTGLYLLSR*