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RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_776_29

Organism: Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450

near complete RP 41 / 55 MC: 5 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(32654..33154)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Pseudomonas RepID=I2BTX8_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 98.8
  • Coverage: 166.0
  • Bit_score: 334
  • Evalue 6.20e-89
ECF subfamily RNA polymerase sigma-70 factor Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 166.0
  • Bit_score: 337
  • Evalue 7.80e-90
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 166.0
  • Bit_score: 334
  • Evalue 1.70e-89

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Taxonomy

RLO_Pseudomonas_60_38 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 501
ATGATTCCTCAGCCGCCCCGCAGAACAGGCTTTTTCGAGCACTACGAAGAGTTGATCGGCACCTGGACACGCCGCCTGAGAAACCGTCAGCAAGCCGAAGACCTGGCGCACGACACCTTCGTGCGTGTGCTTGAGTCCGCTGCCTGCGAGGTGGCGCAACCGCGCGCCTACCTGCATCAAACCGCGCGCAATATTGCGGTGGACGCCTACCGCCGCGAAGACCGTCGCGAGACGTTGACGCTGCAGGTGGCTGATCACAGTACGCCGCACAGTAGCGACCCGGAACATTACATGCACGCGATCCAATTGGCCGACGCCATCGAGCGGGCGCTGGCCGAATTGCCGCTCAACTGTCGCAGGATTTTTATCTGGCAGAAGATCGAAGGGCTCACCCAGCAGGAAATCGCCACACGCCTGGGGCTGTCTAAAAACATGGTGGAAAAGTATATGATCCGCACCTTGCGGCATCTGCGTGATCGTCTGGATGCGAGCGCGCCATGA
PROTEIN sequence
Length: 167
MIPQPPRRTGFFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESAACEVAQPRAYLHQTARNIAVDAYRREDRRETLTLQVADHSTPHSSDPEHYMHAIQLADAIERALAELPLNCRRIFIWQKIEGLTQQEIATRLGLSKNMVEKYMIRTLRHLRDRLDASAP*