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scnpilot_p_inoc_scaffold_560_40

Organism: SCNpilot_P_inoc_Myxococcales_68_7

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Location: comp(50683..51294)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D6V0_MYXXD similarity UNIREF
DB: UNIREF100
  • Identity: 59.6
  • Coverage: 198.0
  • Bit_score: 232
  • Evalue 3.10e-58
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 59.6
  • Coverage: 198.0
  • Bit_score: 232
  • Evalue 8.70e-59
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="M similarity UNIPROT
DB: UniProtKB
  • Identity: 59.6
  • Coverage: 198.0
  • Bit_score: 232
  • Evalue 4.30e-58

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Taxonomy

Myxococcus xanthus → Myxococcus → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 612
ATGTCCGACGAGCTGGATGTCGCCGAGGCCGCCCGAGCGCTCGATCCCGATGTCACGAGGGTGCTCGTCGACAACCATCGCGAGTTCTTGCGCTTCCTCGAGCGGCGCGTGGGGCGGCGTGACGTCGCTGAGGACATCCTCCAGGATGCCTTCGCGCGAGGCCTCGACAAGCTCCAGACGCTGCGCGACGGCGAGGCGGTGGTCGCGTGGTTCTACCGCACGCTGCGGAACGCGACCGTCGACTACTACCGTCGAGCGAAGGTTGCCGATCGGGCGCTGACGCAGTTCGCGGAGGAGATCGCGTCGAACGAGGAGCCGCCGGAGTCGGTGCACGCCGAGGTCTGCCGCTGCGTCACGCGCCTGGCCGACACGTTGAAGCCCGAGTACGCGGACGCGCTCCGAAGCGTCGAGGTCGAGGGGATGTCCGTGAAGGGCTTCGCCGAGGAGCGCGGCATCTCGACGAACAACGCCGCCGTCCGTGTCTTCCGCGCTCGCGCAGCGCTCCGGCGCCAGCTCGCCGTCTCGTGCGGGACCTGTGCGGACCACGGCTGCGTCTCCTGCACGTGCGACGAGAAGCCGGGCGGGGCGGGGCGCGGCTGCGGCTCGTCCTGA
PROTEIN sequence
Length: 204
MSDELDVAEAARALDPDVTRVLVDNHREFLRFLERRVGRRDVAEDILQDAFARGLDKLQTLRDGEAVVAWFYRTLRNATVDYYRRAKVADRALTQFAEEIASNEEPPESVHAEVCRCVTRLADTLKPEYADALRSVEVEGMSVKGFAEERGISTNNAAVRVFRARAALRRQLAVSCGTCADHGCVSCTCDEKPGGAGRGCGSS*