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scnpilot_p_inoc_scaffold_3638_6

Organism: SCNpilot_P_inoc_Burkholderiales_68_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(6977..7534)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Herbaspirillum sp. YR522 RepID=J2WCA9_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 52.1
  • Coverage: 165.0
  • Bit_score: 178
  • Evalue 4.80e-42
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJN10330.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" so similarity UNIPROT
DB: UniProtKB
  • Identity: 52.1
  • Coverage: 165.0
  • Bit_score: 178
  • Evalue 6.80e-42
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 50.0
  • Coverage: 166.0
  • Bit_score: 167
  • Evalue 3.10e-39

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Taxonomy

Herbaspirillum sp. YR522 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
GTGGCGGCTGGCGCATCCTGGGGACGGGCTTCGCAGGCGGATCCGGCGGGCGATGAGCTGGACCAGTGGTACCGCGCCCACCACCGCTGGCTTGCGCACTGGCTGTCGGGCAAGCTGGGCTGCACGCACCAGGCGGCCGATGTGGCGCAGGACACCTTCGTGAAGGTGCTGGGCCGCTGGCGCCGCGACGGGCTGCCTGCGGCGTTCCAGCAGCCGCGCGCGCTGCTCGTGACCGTGGCGCGCGGGCTGCTCGTGGACCAGTGGCGCCGCCAGGACGTGGAGCGCGCCTGCCTCGAAGCGCTGGCGCAACTGCCGCCCGAGCATGCGCCCGCGCCCGAGGCGCGCATGGCCGCCGTGCAGATGCTCTGCCGCCTGCACGCGGTGCTCGAACGCATCGCGCCGCGCGCGCAGCAGGTGTTCCTGCTCTCCCAGGTCGATGGCCTGCCGGGCCGCGAGATCGCCCAGCGCGTCGGGGTCTCGCTCGCCACCGTTGAGCGCGACCTGGCTGCCGCCTGGCGTGCCTGCCTCGCGCTCGCGCGCGATGAGGGCTGGGCATGA
PROTEIN sequence
Length: 186
VAAGASWGRASQADPAGDELDQWYRAHHRWLAHWLSGKLGCTHQAADVAQDTFVKVLGRWRRDGLPAAFQQPRALLVTVARGLLVDQWRRQDVERACLEALAQLPPEHAPAPEARMAAVQMLCRLHAVLERIAPRAQQVFLLSQVDGLPGREIAQRVGVSLATVERDLAAAWRACLALARDEGWA*