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scnpilot_p_inoc_scaffold_628_17

Organism: SCNpilot_P_inoc_Burkholderiales_67_12

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(16905..17462)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12552975 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 78.1
  • Coverage: 183.0
  • Bit_score: 289
  • Evalue 3.30e-75
RNA polymerase sigma factor, sigma-70 family; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 77.8
  • Coverage: 185.0
  • Bit_score: 288
  • Evalue 7.90e-75
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 69.6
  • Coverage: 181.0
  • Bit_score: 247
  • Evalue 4.10e-63

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Taxonomy

RLO_Burkholderiales_65_40 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
ATGCGAACCCTTCTGCGCCACCTCGATGACAGCGAGTGCCTCGCCCGTGCCCGGCAGGGCGAGGTGGCCGCGTTCTCGGAGCTGGTGGCGCGCTACCAGGACCGCATCTACCGCTTCCTGCTGCGGCTCACGCGCTCCCCCGACGATGCCCTGGAGCTGACGCAGGAGACCTTTCTGAACGCCTACCAGGCCCTGGCGCGCTGGCAGCCCGAAGCGCAGTTCACGACCTGGCTGTTCCGCATTGCGCGCAACCAGGCCTTCGACTGGCTGCGGCGCGGCAAGCGGGCCGAGTTCGTGGCGCTGGACGAGGAACAGGAGCACGGCCTTGCCGATCCCGGCCCGGGACCGGATGCAACGCTGGAGACCACGCAAAGGCTGCGGGGCCTGGAGCGGGCCCTGGCCCGGCTGCCCACGGAGCACCGCGAAATCCTGCTGCTGCGGGAGATCGAAGACCTGTCCTACGAGGACATCGCCACCGTGCTGGACATCAGCCTGGGCACCGTCAAATCGCGCATCGCCCGTGCGCGCGCCAGCCTGTTGGACAAAATGCCGCGCTGA
PROTEIN sequence
Length: 186
MRTLLRHLDDSECLARARQGEVAAFSELVARYQDRIYRFLLRLTRSPDDALELTQETFLNAYQALARWQPEAQFTTWLFRIARNQAFDWLRRGKRAEFVALDEEQEHGLADPGPGPDATLETTQRLRGLERALARLPTEHREILLLREIEDLSYEDIATVLDISLGTVKSRIARARASLLDKMPR*