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scnpilot_p_inoc_scaffold_24_119

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(124288..124875)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7Z880_9XANT similarity UNIREF
DB: UNIREF100
  • Identity: 56.9
  • Coverage: 188.0
  • Bit_score: 208
  • Evalue 6.00e-51
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHY58369.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Steno similarity UNIPROT
DB: UniProtKB
  • Identity: 78.6
  • Coverage: 173.0
  • Bit_score: 273
  • Evalue 2.10e-70
RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 55.4
  • Coverage: 168.0
  • Bit_score: 187
  • Evalue 4.00e-45

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Taxonomy

Stenotrophomonas rhizophila → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 588
ATGAGCGCGGCACTTGCGGCGGAGCGTTCGTTGTGGCTCGCCGAGCACGTGCTGCCGTGCGAGCCGGCGCTGCGCGACTGGCTGCAGCGGCGCCTGCCGGTGCGCCAGGACGTGGATGACGTGATCCAGGAGACCTACGCCATCCTGGCGGCGATGGCGGACGTATCGCACGTGCGCCAGCCGCGCGCCTACGTGTATTCGGTGGCGCAGTCGGTGGTGCTGCAGCAGCTGCGGCGCGCGCAGGTGGTGTCGATCGAGGCCGTGGCCGAGATCGAGCGGGTGGCCATCGGCGGCGAGGAGGCGTGTCCGGAACGGACCGCGTCCTCGCGGCAGGAGCTGGCGCGGATCGGCGCATTGATCGACAGCCTGCCGGACAAGTGCCGGCAGGCTTTCGTCCTGCGCCGGGTCGAAGGCTACTCGCAGCGCGAGATCGCCCAGCGGATGCAGATCAGCGAGAACACCGTGGAGAAACACATCTGCAAGGGAATCCGGGTATTGATGGATTCGATGAAGCGCGACGGGAAGGACGCGGAAGAGGGCAGGGAACGGCTCGCAGCAGGAGGAACACGCCATGCGCGCACACGATGA
PROTEIN sequence
Length: 196
MSAALAAERSLWLAEHVLPCEPALRDWLQRRLPVRQDVDDVIQETYAILAAMADVSHVRQPRAYVYSVAQSVVLQQLRRAQVVSIEAVAEIERVAIGGEEACPERTASSRQELARIGALIDSLPDKCRQAFVLRRVEGYSQREIAQRMQISENTVEKHICKGIRVLMDSMKRDGKDAEEGRERLAAGGTRHARTR*