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scnpilot_p_inoc_scaffold_307_31

Organism: SCNpilot_P_inoc_Flavobacterium_40_86

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 15 / 38 MC: 1
Location: comp(32820..33362)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RVQ2_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 82.8
  • Coverage: 180.0
  • Bit_score: 310
  • Evalue 1.00e-81
  • rbh
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ESU18598.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 82.2
  • Coverage: 180.0
  • Bit_score: 309
  • Evalue 3.20e-81
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 75.0
  • Coverage: 180.0
  • Bit_score: 289
  • Evalue 7.00e-76

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Taxonomy

Flavobacterium cauense → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 543
TTGCAGGACGAAAAAACATTTATCAGCGAATTATTGAATCCGAAAACGCAGAATGAAGCGTTTCGAAAGCTGCTATCCGAATACCAGCGTCCGCTATACAATCATATCCGGAACATCGTTATCAATCACGACGATACCGACGATGTTTTACAAAACACTTTTATCAAAGTATTTAATAATCTGAATGGTTTTAAAGGCGAAAGCAAATTGTTTTCCTGGATTTACCGTATTGCTACGAATGAAGCCATTACATTTATCCATCAGAGAGCCCGGAAAGCCGGTGTTTCCAGCGAAGAGCTGCAATCGAAAGCCGTGAATAACCTGGAAGCCGATGTGGATTATGACGGTGATGTCATCCAGCTGAAATTACAGAAAGCTGTGGCTACCTTACCGGAAAAACAACAGCTGGTTTTTAAAATGAAATATTTTGAAGAACTGAAATATGAAGATATGTCGGAAATTTTAGGAACCTCCGTAGGCGCCTTAAAAGCGTCGTATCATCATGCTGTTAAAAAAATTGAAGAATATTTAAATTCCGATTAA
PROTEIN sequence
Length: 181
LQDEKTFISELLNPKTQNEAFRKLLSEYQRPLYNHIRNIVINHDDTDDVLQNTFIKVFNNLNGFKGESKLFSWIYRIATNEAITFIHQRARKAGVSSEELQSKAVNNLEADVDYDGDVIQLKLQKAVATLPEKQQLVFKMKYFEELKYEDMSEILGTSVGALKASYHHAVKKIEEYLNSD*