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scnpilot_p_inoc_scaffold_12255_3

Organism: SCNpilot_P_inoc_Mobile_elements_general

RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Location: comp(1648..1932)

Top 3 Functional Annotations

Value Algorithm Source
Phage transcriptional regulator, AlpA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKX6_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 62.8
  • Coverage: 86.0
  • Bit_score: 110
  • Evalue 8.30e-22
phage transcriptional regulator AlpA similarity KEGG
DB: KEGG
  • Identity: 62.8
  • Coverage: 86.0
  • Bit_score: 110
  • Evalue 2.30e-22
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ACS21127.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor similarity UNIPROT
DB: UniProtKB
  • Identity: 62.8
  • Coverage: 86.0
  • Bit_score: 110
  • Evalue 1.20e-21

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 285
ATGTCACTCACGTCCCCCACCGGCCATCGCGACACGCTTCACATGCCTATGGCGTCTCCCGCATTTTTTCGTATGGTTGACGTGATGCGCATCACGGCGTTGAGCCGCGCCACCTTGTATCGGCGAATCGCCGAAGGCAAGTTCCCGCCGCCCGTTCACCTCGGAGGACGCGCATGCGGCTGGGCGCCAGCCGCGCTGCAAGCCTGGATCGACGATCCCGAAGGTTATCTGGTTGCCGGGCCGACCAGGCATCTCGGGTCGGCTCAGATGGGCGGCAGGCCCTGA
PROTEIN sequence
Length: 95
MSLTSPTGHRDTLHMPMASPAFFRMVDVMRITALSRATLYRRIAEGKFPPPVHLGGRACGWAPAALQAWIDDPEGYLVAGPTRHLGSAQMGGRP*