Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
ECF subfamily RNA polymerase sigma-24 subunit | similarity |
KEGG
DB: KEGG |
34.4 | 180.0 | 115 | 1.90e-23 | hhy:Halhy_0080 |
coiled-coil (db=Coil db_id=coil from=100 to=121 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | hhy:Halhy_0080 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=184 evalue=2.9e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.90e-34 | hhy:Halhy_0080 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=111 evalue=1.3e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.30e-16 | hhy:Halhy_0080 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=7 to=94 evalue=2.7e-13) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.70e-13 | hhy:Halhy_0080 |
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=129 to=180 evalue=8.1e-12 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.10e-12 | hhy:Halhy_0080 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=116 to=184 evalue=8.3e-12 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.30e-12 | hhy:Halhy_0080 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=32 to=91 evalue=6.9e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.90e-11 | hhy:Halhy_0080 |
rpoE; RNA polymerase, sigma-E factor; heat shock and oxidative stress; K03088 RNA polymerase sigma-70 factor, ECF subfamily alias=ACD28_20444.84273.13G0050,ACD28_20444.84273.13_50,ACD28_C00025G00050 id=31074 tax=ACD28 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=PER organism_desc=PER | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 382 | 9.20e-104 | hhy:Halhy_0080 |
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=GWA2_PER_44_7 |
UNIPROT
DB: UniProtKB |
100.0 | 189.0 | 382 | 3.20e-103 | ggdbv1_5015147 |