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ACD28_25_50 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
34.4 180.0 115 1.90e-23 hhy:Halhy_0080
coiled-coil (db=Coil db_id=coil from=100 to=121 evalue=NA) iprscan interpro
DB: Coil
null null null null hhy:Halhy_0080
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=184 evalue=2.9e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
null null null 2.90e-34 hhy:Halhy_0080
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=111 evalue=1.3e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 1.30e-16 hhy:Halhy_0080
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=7 to=94 evalue=2.7e-13) iprscan interpro
DB: Gene3D
null null null 2.70e-13 hhy:Halhy_0080
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=129 to=180 evalue=8.1e-12 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 8.10e-12 hhy:Halhy_0080
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=116 to=184 evalue=8.3e-12 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 8.30e-12 hhy:Halhy_0080
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=32 to=91 evalue=6.9e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 6.90e-11 hhy:Halhy_0080
rpoE; RNA polymerase, sigma-E factor; heat shock and oxidative stress; K03088 RNA polymerase sigma-70 factor, ECF subfamily alias=ACD28_20444.84273.13G0050,ACD28_20444.84273.13_50,ACD28_C00025G00050 id=31074 tax=ACD28 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=PER organism_desc=PER similarity UNIREF
DB: UNIREF90
100.0 null 382 9.20e-104 hhy:Halhy_0080
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=GWA2_PER_44_7 UNIPROT
DB: UniProtKB
100.0 189.0 382 3.20e-103 ggdbv1_5015147