ggKbase home page

RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66

Search features with annotation key words

Displaying items 31-60 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_31
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32346..32897
DNA (552bp) protein (184aa)
id=1889554 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=1889554 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_32
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32957..34318)
DNA (1362bp) protein (454aa)
peptidase S41 id=1889551 bin=GWD2_Bacteroidetes_40_43 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
peptidase S41 Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_33
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34441..35928)
DNA (1488bp) protein (496aa)
CAMP protein kinase regulatory chain id=1889548 bin=GWD2_Bacteroidetes_40_43 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
cAMP-binding protein Tax=GWE2_Bacteroidetes_40_63_curated
cAMP-binding protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_34
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36099..37949)
DNA (1851bp) protein (617aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41) Tax=GWE2_Bacteroidetes_40_63_curated
3-oxoacyl-[acyl-carrier-protein] synthase 3 id=1889545 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Hydrogenobaculum taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
3-oxoacyl-(acyl-carrier-protein) synthase III
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_35
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38077..38670)
DNA (594bp) protein (198aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=GWE2_Bacteroidetes_40_63_curated
Phosphoribosylglycinamide formyltransferase id=1889542 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
phosphoribosylglycinamide formyltransferase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_36
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38691..39170)
DNA (480bp) protein (160aa)
Ribonuclease H (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4] Tax=GWE2_Bacteroidetes_40_63_curated
Ribonuclease H (EC:3.1.26.4)
Ribonuclease H id=1889539 bin=GWD2_Bacteroidetes_40_43 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_37
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39295..40194
DNA (900bp) protein (300aa)
type II site-specific deoxyribonuclease (EC:3.1.21.4) Tax=GWE2_Bacteroidetes_40_63_curated
type II site-specific deoxyribonuclease (EC:3.1.21.4)
type II site-specific deoxyribonuclease id=3990748 bin=GWC2_Bacteroidetes_40_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_38
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40194..41174
DNA (981bp) protein (327aa)
DNA adenine methylase; K06223 DNA adenine methylase [EC:2.1.1.72] Tax=GWE2_Bacteroidetes_40_63_curated
DNA adenine methylase id=3990750 bin=GWC2_Bacteroidetes_40_13 species=Muricauda ruestringensis genus=Muricauda taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
DNA adenine methylase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_39
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41185..42165
DNA (981bp) protein (327aa)
tRNA-dihydrouridine synthase id=1889530 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
tRNA-U20-dihydrouridine synthase Tax=GWE2_Bacteroidetes_40_63_curated
tRNA-U20-dihydrouridine synthase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_40
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42332..42445)
DNA (114bp) protein (38aa)
id=1889492 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=1889492 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_41
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42473..43633)
DNA (1161bp) protein (387aa)
cytochrome D ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-] Tax=GWE2_Bacteroidetes_40_63_curated
Cytochrome d ubiquinol oxidase, subunit II id=1889490 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
cytochrome D ubiquinol oxidase subunit II
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_42
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(43677..45233)
DNA (1557bp) protein (519aa)
cydA; cytochrome D ubiquinol oxidase, subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-] Tax=GWE2_Bacteroidetes_40_63_curated
Cytochrome D ubiquinol oxidase, subunit I id=4189499 bin=GWF2_Bacteroidetes_40_13 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
cydA; cytochrome D ubiquinol oxidase, subunit I
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_43
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45241..45405)
DNA (165bp) protein (55aa)
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
Putative uncharacterized protein id=3008305 bin=GWF2_Bacteroidetes_41_31 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_44
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45689..46096)
DNA (408bp) protein (136aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain id=4189497 bin=GWF2_Bacteroidetes_40_13 species=Desulfitobacterium dehalogenans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Tax=GWE2_Bacteroidetes_40_63_curated
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_45
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(46451..46966)
DNA (516bp) protein (172aa)
Putative Fe-S oxidoreductase id=4189496 bin=GWF2_Bacteroidetes_40_13 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
putative Fe-S oxidoreductase Tax=GWE2_Bacteroidetes_40_63_curated
putative Fe-S oxidoreductase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_46
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

47077..48066
DNA (990bp) protein (330aa)
tryptophanyL-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=GWE2_Bacteroidetes_40_63_curated
tryptophanyl-tRNA synthetase id=1889486 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
tryptophanyl-tRNA synthetase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_47
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48053..48262)
DNA (210bp) protein (70aa)
id=1889485 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=1889485 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_48
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

48327..51092
DNA (2766bp) protein (922aa)
PAS domain-containing protein Tax=GWE2_Bacteroidetes_40_63_curated
PAS domain S-box id=1889484 bin=GWD2_Bacteroidetes_40_43 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
PAS domain-containing protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_49
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

51216..53579
DNA (2364bp) protein (788aa)
Histidine kinase HAMP region domain protein id=1889483 bin=GWD2_Bacteroidetes_40_43 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
histidine kinase hamp region domain protein Tax=GWE2_Bacteroidetes_40_63_curated
histidine kinase hamp region domain protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_50
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

53921..55330
DNA (1410bp) protein (470aa)
Putative uncharacterized protein id=1889482 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
Putative uncharacterized protein Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_51
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(55381..56652)
DNA (1272bp) protein (424aa)
Putative uncharacterized protein id=1889481 bin=GWD2_Bacteroidetes_40_43 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_52
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

56951..58390
DNA (1440bp) protein (480aa)
id=4189464 bin=GWF2_Bacteroidetes_40_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
id=4189464 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_53
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(58437..59051)
DNA (615bp) protein (205aa)
Deoxynucleoside kinase id=4189463 bin=GWF2_Bacteroidetes_40_13 species=Flavobacterium columnare genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
deoxynucleoside kinase Tax=GWE2_Bacteroidetes_40_63_curated
deoxynucleoside kinase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_54
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

59471..60169
DNA (699bp) protein (233aa)
cmk; putative cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=GWE2_Bacteroidetes_40_63_curated
Cytidylate kinase id=4189462 bin=GWF2_Bacteroidetes_40_13 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
cmk; putative cytidylate kinase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_55
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

60147..61067
DNA (921bp) protein (307aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase id=1889473 bin=GWD2_Bacteroidetes_40_43 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_56
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

61081..62061
DNA (981bp) protein (327aa)
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=GWE2_Bacteroidetes_40_63_curated
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase id=4543381 bin=GWC2_Bacteroidetes_40_13 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_57
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

62450..64876
DNA (2427bp) protein (809aa)
TonB-dependent receptor plug domain protein id=1889469 bin=GWD2_Bacteroidetes_40_43 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
TonB-dependent receptor Tax=GWE2_Bacteroidetes_40_63_curated
TonB-dependent receptor
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_58
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

65092..66552
DNA (1461bp) protein (487aa)
glycoside hydrolase; K01201 glucosylceramidase [EC:3.2.1.45] Tax=GWE2_Bacteroidetes_40_63_curated
glycoside hydrolase id=1889463 bin=GWD2_Bacteroidetes_40_43 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
glucosylceramidase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_59
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

66823..67302
DNA (480bp) protein (160aa)
id=1889461 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=1889461 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_66_60
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(67509..68900)
DNA (1392bp) protein (464aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=GWE2_Bacteroidetes_40_63_curated
Putative uncharacterized protein id=1889457 bin=GWD2_Bacteroidetes_40_43 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
peptidase M24
Displaying items 31-60 of 85 in total

View Taxonomy