ggKbase home page

RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_47_80

Organism: Bacteroidetes bacterium RIFOXYC2_FULL_40_12

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 14 / 38
Location: comp(87122..87364)

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix domain protein id=1980996 bin=GWD2_Bacteroidetes_40_43 species=Sphingobacterium sp. genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 164
  • Evalue 4.10e-38
helix-turn-helix domain-containing protein Tax=GWE2_Bacteroidetes_40_63_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 80.0
  • Bit_score: 164
  • Evalue 5.70e-38
helix-turn-helix domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 69.4
  • Coverage: 72.0
  • Bit_score: 113
  • Evalue 4.00e-23

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWE2_Bacteroidetes_40_63_curated → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 243
ATGGGAAAGGACAAGCTACAATTTAAAGAAGAAGACCTCAAGAAACTCGGTGAGAGAATCCGGTCATTACGGATAAAAAAAGGATACAGTAATTACGAAAATTTTGCCTATGAGCATGATATTGCCCGTGCTCAATACGGTAAATACGAAAAAGGGGAAGATTTAAGATATTCCAGTCTGATGAAGGTCATCAGGGCGCTTGGTGTAACACCAAAGGATTTTTTTTCGGAGGGGTTTGAATAA
PROTEIN sequence
Length: 81
MGKDKLQFKEEDLKKLGERIRSLRIKKGYSNYENFAYEHDIARAQYGKYEKGEDLRYSSLMKVIRALGVTPKDFFSEGFE*