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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 501-550 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_21673
Species: Mesorhizobium sp. L48C026A00 (100%)
2 1419 bp 52.57 2.11 100.63
scnpilot_expt_750_bf_scaffold_19318
Phylum: Proteobacteria (66.67%)
3 2370 bp 58.44 6.65 100.63
scnpilot_expt_750_bf_scaffold_25394
Species: Shinella sp. DD12 (50%)
2 1264 bp 62.10 4.15 100.63
scnpilot_expt_750_bf_scaffold_11499
Species: Devosia limi (66.67%)
3 3646 bp 67.28 5.21 100.63
scnpilot_expt_750_bf_scaffold_29599
Species: Caldisalinibacter kiritimatiensis (100%)
2 1112 bp 33.99 1.80 100.63
scnpilot_expt_750_bf_scaffold_34106
Species: Pseudonocardia dioxanivorans (100%)
3 1595 bp 72.92 4.86 100.63
scnpilot_expt_750_bf_scaffold_14721
Species: Chryseobacterium sp. StRB126 (66.67%)
3 2871 bp 34.13 3.40 100.63
scnpilot_expt_750_bf_scaffold_24900
Genus: Alicycliphilus (66.67%)
3 1282 bp 71.92 4.10 100.62
scnpilot_expt_750_bf_scaffold_24730
Order: Caulobacterales (66.67%)
3 1288 bp 68.09 3.11 100.62
scnpilot_expt_750_bf_scaffold_29076
Species: Rhodanobacter thiooxydans (50%)
2 1133 bp 67.43 5.30 100.62
scnpilot_expt_750_bf_scaffold_8271
Domain: Bacteria (50%)
4 2752 bp 64.10 5.18 100.62
scnpilot_expt_750_bf_scaffold_23865
Species: Chitinophaga pinensis (100%)
2 1947 bp 45.40 3.08 100.62
scnpilot_expt_750_bf_scaffold_28842
Species: Sphingobium sp. SYK-6 (66.67%)
3 1142 bp 68.39 3.50 100.61
scnpilot_expt_750_bf_scaffold_20567
Species: Oligotropha carboxidovorans (75%)
4 1470 bp 65.58 5.61 100.61
scnpilot_expt_750_bf_scaffold_24175
Species: Sphingobium sp. SYK-6 (50%)
4 1309 bp 65.78 4.97 100.61
scnpilot_expt_750_bf_scaffold_5935
Order: Xanthomonadales (100%)
4 3453 bp 67.04 4.34 100.61
scnpilot_expt_750_bf_scaffold_13431 4 1974 bp 52.68 3.80 100.61
scnpilot_expt_750_bf_scaffold_23854
Species: Cellulophaga baltica (50%)
2 1977 bp 39.25 4.43 100.61
scnpilot_expt_750_bf_scaffold_23793
Species: GWF2_Melainabacteria_37_15_curated (50%)
2 1324 bp 32.55 2.83 100.60
scnpilot_expt_750_bf_scaffold_9631
Species: Acidovorax sp. NO-1 (66.67%)
3 2487 bp 67.27 4.22 100.60
scnpilot_expt_750_bf_scaffold_14948
Genus: Agrobacterium (66.67%)
3 1828 bp 69.86 3.15 100.60
scnpilot_expt_750_bf_scaffold_17133
Species: Dyadobacter fermentans (100%)
2 1664 bp 48.08 4.21 100.60
scnpilot_expt_750_bf_scaffold_28078
Species: BJP_IG2103_Dechloromonas_60_92 (50%)
2 1169 bp 61.25 3.42 100.60
scnpilot_expt_750_bf_scaffold_23490
Domain: Bacteria (66.67%)
3 1336 bp 68.19 4.87 100.60
scnpilot_expt_750_bf_scaffold_6215
Order: Burkholderiales (50%)
4 3346 bp 42.47 3.29 100.60
scnpilot_expt_750_bf_scaffold_32585 3 1005 bp 61.09 5.97 100.60
scnpilot_expt_750_bf_scaffold_23322
Species: CG_Rhodocyc_01 (66.67%)
3 1342 bp 66.39 4.47 100.60
scnpilot_expt_750_bf_scaffold_19769
Class: Betaproteobacteria (66.67%)
3 1512 bp 63.36 16.37 100.59
scnpilot_expt_750_bf_scaffold_27812
Species: Criblamydia sequanensis (50%)
2 1178 bp 38.03 2.12 100.59
scnpilot_expt_750_bf_scaffold_32092
Species: Sphingobacterium sp. PM2-P1-29 (100%)
2 1023 bp 40.76 3.42 100.59
scnpilot_expt_750_bf_scaffold_22762
Species: Flavobacterium hydatis (50%)
2 1366 bp 42.39 5.49 100.59
scnpilot_expt_750_bf_scaffold_22681
Species: Mucilaginibacter paludis (50%)
2 1369 bp 48.94 2.92 100.58
scnpilot_expt_750_bf_scaffold_8474
Species: Flavobacterium sp. KMS (50%)
2 3600 bp 40.47 4.86 100.58
scnpilot_expt_750_bf_scaffold_31928
Species: RLO_Rhodospirillales_67_15 (50%)
2 1029 bp 71.72 3.89 100.58
scnpilot_expt_750_bf_scaffold_27151
Species: Anaerolinea thermophila (50%)
2 1202 bp 43.09 2.50 100.58
scnpilot_expt_750_bf_scaffold_18965
Genus: Brevundimonas (66.67%)
3 1554 bp 68.66 4.02 100.58
scnpilot_expt_750_bf_scaffold_26855
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1211 bp 42.53 3.10 100.58
scnpilot_expt_750_bf_scaffold_16214
Genus: Devosia (100%)
3 1730 bp 64.57 4.48 100.58
scnpilot_expt_750_bf_scaffold_10874
Species: R_Phenylobacterium_69_31 (100%)
4 2285 bp 70.63 4.38 100.57
scnpilot_expt_750_bf_scaffold_13758
Species: Burkholderia cenocepacia (50%)
2 1942 bp 51.65 4.38 100.57
scnpilot_expt_750_bf_scaffold_18302
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 1590 bp 39.81 2.99 100.57
scnpilot_expt_750_bf_scaffold_21644
Species: Devosia sp. LC5 (50%)
2 1420 bp 68.31 5.81 100.56
scnpilot_expt_750_bf_scaffold_15601
Species: Beijerinckia indica (100%)
2 1775 bp 63.44 2.68 100.56
scnpilot_expt_750_bf_scaffold_11917
Order: Burkholderiales (66.67%)
3 2145 bp 65.36 4.31 100.56
scnpilot_expt_750_bf_scaffold_25591
Species: Leifsonia aquatica (50%)
2 1256 bp 69.11 5.57 100.56
scnpilot_expt_750_bf_scaffold_25433
Species: Shinella sp. DD12 (50%)
2 1262 bp 62.92 3.76 100.55
scnpilot_expt_750_bf_scaffold_10445
Species: Sphingobium sp. SYK-6 (50%)
4 2348 bp 68.19 4.68 100.55
scnpilot_expt_750_bf_scaffold_30206
Phylum: Proteobacteria (66.67%)
3 1089 bp 64.83 2.98 100.55
scnpilot_expt_750_bf_scaffold_30211
Order: Hydrogenophilales (66.67%)
3 1089 bp 64.10 73.46 100.55
scnpilot_expt_750_bf_scaffold_29823
Species: Novosphingobium sp. Rr 2-17 (100%)
2 1104 bp 65.04 4.53 100.54
Displaying items 501-550 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.