ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %

Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17

Displaying items 751-800 of 27580 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_expt_750_bf_scaffold_17032 Species: Pseudoxanthomonas spadix (100%)	3	1672 bp	63.88	5.08	100.30
scnpilot_expt_750_bf_scaffold_32601 Species: Mesorhizobium sp. L2C084A000 (100%)	2	1005 bp	68.06	3.48	100.30
scnpilot_expt_750_bf_scaffold_32604 Species: Afipia felis (100%)	2	1005 bp	62.99	3.98	100.30
scnpilot_expt_750_bf_scaffold_32514 Species: Rhizobium tropici (100%)	2	1008 bp	61.61	2.73	100.30
scnpilot_expt_750_bf_scaffold_13017 Species: Rhizobium tropici (100%)	3	2019 bp	60.82	3.47	100.30
scnpilot_expt_750_bf_scaffold_32434 Species: Pseudonocardia dioxanivorans (100%)	2	1011 bp	70.62	5.69	100.30
scnpilot_expt_750_bf_scaffold_12868 Species: Sphingomonas sp. WHSC-8 (66.67%)	3	2037 bp	70.05	7.98	100.30
scnpilot_expt_750_bf_scaffold_32192 Species: Dyadobacter fermentans (100%)	2	1020 bp	55.20	2.94	100.29
scnpilot_expt_750_bf_scaffold_22886 Species: Pseudonocardia dioxanivorans (66.67%)	3	1361 bp	72.08	4.96	100.29
scnpilot_expt_750_bf_scaffold_41030 Species: Enterobacter cloacae (50%)	2	1364 bp	69.72	4.95	100.29
scnpilot_expt_750_bf_scaffold_22798 Species: Neorhizobium galegae (50%)	2	1364 bp	67.60	3.12	100.29
scnpilot_expt_750_bf_scaffold_22810 Species: marine actinobacterium PHSC20C1 (50%)	2	1364 bp	73.68	6.23	100.29
scnpilot_expt_750_bf_scaffold_23254 Species: Rhizobium freirei (66.67%)	3	2049 bp	64.03	3.29	100.29
scnpilot_expt_750_bf_scaffold_32023 Species: Ralstonia pickettii (50%)	2	1026 bp	64.52	3.17	100.29
scnpilot_expt_750_bf_scaffold_16479 Genus: Sphingopyxis (66.67%)	3	1711 bp	56.46	3.80	100.29
scnpilot_expt_750_bf_scaffold_37647 Domain: Bacteria (66.67%)	3	2055 bp	71.92	3.16	100.29
scnpilot_expt_750_bf_scaffold_31675 Species: bacterium YEK0313 (100%)	2	1038 bp	62.14	6.26	100.29
scnpilot_expt_750_bf_scaffold_22339 Species: Mizugakiibacter sediminis (66.67%)	3	1385 bp	63.18	3.43	100.29
scnpilot_expt_750_bf_scaffold_22364 Species: delta proteobacterium NaphS2 (50%)	2	1385 bp	42.60	2.71	100.29
scnpilot_expt_750_bf_scaffold_31578 Species: RLO_Burkholderiales_65_40 (50%)	2	1041 bp	71.18	6.48	100.29
scnpilot_expt_750_bf_scaffold_31479 Species: Sutterella sp. CAG:397 (50%)	2	1044 bp	66.67	5.03	100.29
scnpilot_expt_750_bf_scaffold_22094 Species: Neorhizobium galegae (100%)	2	1397 bp	66.79	3.94	100.29
scnpilot_expt_750_bf_scaffold_22098 Species: Roseobacter sp. GAI101 (100%)	2	1397 bp	71.08	3.22	100.29
scnpilot_expt_750_bf_scaffold_12363 Species: uncultured bacterium A1Q1_fos_75 (100%)	3	2097 bp	65.62	5.25	100.29
scnpilot_expt_750_bf_scaffold_9871 Species: Burkholderia sp. Ch1-1 (50%)	2	2447 bp	53.00	3.88	100.29
scnpilot_expt_750_bf_scaffold_21978 Species: Sphingobium baderi (100%)	3	1403 bp	66.14	6.59	100.29
scnpilot_expt_750_bf_scaffold_31011 Species: Sphingopyxis sp. MC1 (100%)	2	1059 bp	67.61	5.67	100.28
scnpilot_expt_750_bf_scaffold_31022 Species: Caulobacter vibrioides (50%)	2	1059 bp	72.05	3.78	100.28
scnpilot_expt_750_bf_scaffold_21744 Genus: Agrobacterium (66.67%)	3	1415 bp	64.03	4.24	100.28
scnpilot_expt_750_bf_scaffold_15628 Species: Cytophaga hutchinsonii (50%)	2	1774 bp	35.96	4.79	100.28
scnpilot_expt_750_bf_scaffold_30764 Species: endosymbiont of Acanthamoeba sp. UWC8 (50%)	2	1068 bp	39.33	3.75	100.28
scnpilot_expt_750_bf_scaffold_11764 Species: Afipia sp. P52-10 (100%)	2	2166 bp	66.16	5.89	100.28
scnpilot_expt_750_bf_scaffold_21111 Species: Candidatus Caedibacter acanthamoebae (100%)	2	1445 bp	39.38	2.08	100.28
scnpilot_expt_750_bf_scaffold_30283 Species: Devosia soli (50%)	2	1086 bp	68.69	5.29	100.28
scnpilot_expt_750_bf_scaffold_30208 Species: marine sediment metagenome (50%)	2	1089 bp	31.04	3.67	100.28
scnpilot_expt_750_bf_scaffold_20931	2	1454 bp	27.99	1.72	100.28
scnpilot_expt_750_bf_scaffold_20932 Species: RLO_Burkholderiales_65_40 (50%)	2	1454 bp	66.51	3.27	100.28
scnpilot_expt_750_bf_scaffold_30143 Species: Niastella koreensis (50%)	2	1092 bp	51.19	3.21	100.28
scnpilot_expt_750_bf_scaffold_20849 Species: Acidovorax sp. JS42 (100%)	2	1457 bp	66.78	5.49	100.28
scnpilot_expt_750_bf_scaffold_11587 Species: Phenylobacterium zucineum (66.67%)	3	2187 bp	67.95	3.54	100.27
scnpilot_expt_750_bf_scaffold_20792 Species: Devosia sp. DDB001 (50%)	2	1460 bp	65.75	5.82	100.27
scnpilot_expt_750_bf_scaffold_11492 Species: Pseudopedobacter saltans (50%)	2	2199 bp	41.70	4.55	100.27
scnpilot_expt_750_bf_scaffold_29708 Species: Dyadobacter fermentans (100%)	2	1107 bp	46.16	3.39	100.27
scnpilot_expt_750_bf_scaffold_29732 Species: Chryseobacterium jeonii (100%)	2	1107 bp	41.64	3.16	100.27
scnpilot_expt_750_bf_scaffold_29646 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1110 bp	60.00	5.86	100.27
scnpilot_expt_750_bf_scaffold_20293 Species: Novosphingobium subterraneum (50%)	2	1484 bp	62.74	2.36	100.27
scnpilot_expt_750_bf_scaffold_29580 Species: Agrobacterium rhizogenes (50%)	2	1113 bp	63.97	2.25	100.27
scnpilot_expt_750_bf_scaffold_14931 Species: Lysobacter capsici (50%)	2	3339 bp	62.14	4.64	100.27
scnpilot_expt_750_bf_scaffold_29420 Species: Leifsonia aquatica (100%)	2	1119 bp	73.10	4.92	100.27
scnpilot_expt_750_bf_scaffold_20135	2	1493 bp	42.93	7.03	100.27

Displaying items 751-800 of 27580 in total

SCNpilot_expt_750_bf_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_expt_750_bf_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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