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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 151-200 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_16613
Species: Ochrobactrum sp. CDB2 (100%)
2 1702 bp 54.35 1.76 75.62
scnpilot_expt_750_bf_scaffold_29174
Species: Lactobacillus kisonensis (50%)
2 1129 bp 37.73 1.77 93.53
scnpilot_expt_750_bf_scaffold_21851 2 1409 bp 33.92 1.77 24.27
scnpilot_expt_750_bf_scaffold_29216 3 1127 bp 58.30 1.77 84.92
scnpilot_expt_750_bf_scaffold_16763
Species: Dyadobacter fermentans (66.67%)
3 1691 bp 48.08 1.77 90.83
scnpilot_expt_750_bf_scaffold_21772
Species: Aquamicrobium defluvii (100%)
2 1413 bp 60.01 1.77 98.94
scnpilot_expt_750_bf_scaffold_29111 2 1132 bp 29.59 1.77 95.67
scnpilot_expt_750_bf_scaffold_21813
Species: Taphrina deformans (100%)
1 1411 bp 28.21 1.77 59.32
scnpilot_expt_750_bf_scaffold_29154
Species: Flavobacterium aquatile (100%)
1 1130 bp 42.30 1.77 99.82
scnpilot_expt_750_bf_scaffold_21829
Species: Chitinophaga pinensis (50%)
2 1411 bp 40.75 1.77 85.05
scnpilot_expt_750_bf_scaffold_21903
Species: Adineta vaga (50%)
2 1407 bp 31.13 1.78 71.43
scnpilot_expt_750_bf_scaffold_21913
Species: Cricetulus griseus (50%)
2 1406 bp 32.57 1.78 37.55
scnpilot_expt_750_bf_scaffold_29248
Species: Crassostrea gigas (100%)
1 1126 bp 32.50 1.78 94.32
scnpilot_expt_750_bf_scaffold_29269
Species: Oryzias latipes (50%)
2 1125 bp 33.60 1.78 23.73
scnpilot_expt_750_bf_scaffold_29276 0 1125 bp 35.73 1.78 0.00
scnpilot_expt_750_bf_scaffold_25469
Species: Adineta vaga (100%)
1 1261 bp 31.56 1.78 69.94
scnpilot_expt_750_bf_scaffold_29317
Species: Elstera litoralis (100%)
1 1123 bp 38.29 1.78 99.91
scnpilot_expt_750_bf_scaffold_29320 0 1123 bp 29.12 1.78 0.00
scnpilot_expt_750_bf_scaffold_29430
Species: Dysgonomonas mossii (100%)
1 1119 bp 41.91 1.79 92.76
scnpilot_expt_750_bf_scaffold_17026
Species: Flavobacterium cauense (50%)
2 1672 bp 38.58 1.79 93.12
scnpilot_expt_750_bf_scaffold_29460 2 1117 bp 49.69 1.79 46.46
scnpilot_expt_750_bf_scaffold_29490
Species: Dysgonomonas gadei (100%)
1 1116 bp 33.69 1.79 89.52
scnpilot_expt_750_bf_scaffold_41590
Species: Flavihumibacter petaseus (50%)
2 1254 bp 44.10 1.79 99.76
scnpilot_expt_750_bf_scaffold_22075
Species: Chryseobacterium jeonii (50%)
2 1398 bp 43.63 1.79 82.40
scnpilot_expt_750_bf_scaffold_38964
Species: Candidatus Protochlamydia amoebophila (50%)
2 1398 bp 39.77 1.79 93.35
scnpilot_expt_750_bf_scaffold_22108
Species: Criblamydia sequanensis (50%)
2 1396 bp 38.54 1.79 103.15
scnpilot_expt_750_bf_scaffold_29413
Species: Draconibacterium sp. JN14CK-3 (66.67%)
3 1119 bp 40.75 1.79 99.73
scnpilot_expt_750_bf_scaffold_29421 2 1119 bp 32.89 1.79 74.53
scnpilot_expt_750_bf_scaffold_11293
Species: Dysgonomonas mossii (100%)
2 2225 bp 34.56 1.80 66.88
scnpilot_expt_750_bf_scaffold_19397
Species: Chitinophaga pinensis (50%)
2 1530 bp 45.62 1.80 92.16
scnpilot_expt_750_bf_scaffold_29599
Species: Caldisalinibacter kiritimatiensis (100%)
2 1112 bp 33.99 1.80 100.63
scnpilot_expt_750_bf_scaffold_36516 1 1663 bp 33.67 1.80 38.06
scnpilot_expt_750_bf_scaffold_29666
Species: Dysgonomonas mossii (66.67%)
3 1109 bp 34.45 1.80 80.34
scnpilot_expt_750_bf_scaffold_25866
Species: Xiphophorus maculatus (50%)
2 1246 bp 37.00 1.81 76.32
scnpilot_expt_750_bf_scaffold_26034 2 1240 bp 28.23 1.81 29.76
scnpilot_expt_750_bf_scaffold_29707 3 1107 bp 40.74 1.81 73.71
scnpilot_expt_750_bf_scaffold_29725
Species: Fomitopsis pinicola (50%)
2 1107 bp 35.68 1.81 84.82
scnpilot_expt_750_bf_scaffold_40631
Species: Acyrthosiphon pisum (100%)
1 1104 bp 31.79 1.81 64.95
scnpilot_expt_750_bf_scaffold_29763
Species: Sporocytophaga myxococcoides (50%)
2 1106 bp 31.01 1.81 90.60
scnpilot_expt_750_bf_scaffold_29798 2 1105 bp 27.42 1.81 70.86
scnpilot_expt_750_bf_scaffold_29804
Class: Neoptera (66.67%)
3 1104 bp 37.32 1.81 81.25
scnpilot_expt_750_bf_scaffold_29809
Species: Neochlamydia sp. EPS4 (50%)
2 1104 bp 36.87 1.81 96.47
scnpilot_expt_750_bf_scaffold_25978
Species: Parabacteroides merdae CAG:48 (50%)
2 1243 bp 49.32 1.81 92.44
scnpilot_expt_750_bf_scaffold_29814
Species: Tepidanaerobacter acetatoxydans (50%)
2 1104 bp 40.22 1.81 97.83
scnpilot_expt_750_bf_scaffold_29815
Species: Neochlamydia sp. EPS4 (50%)
2 1104 bp 34.42 1.81 73.91
scnpilot_expt_750_bf_scaffold_29829
Species: Fopius arisanus (100%)
1 1103 bp 31.82 1.81 99.82
scnpilot_expt_750_bf_scaffold_42046
Species: Philodina roseola (50%)
2 1517 bp 32.63 1.81 43.51
scnpilot_expt_750_bf_scaffold_39125
Species: Dyadobacter fermentans (100%)
2 1521 bp 44.51 1.81 69.82
scnpilot_expt_750_bf_scaffold_29866 2 1102 bp 31.94 1.81 44.92
scnpilot_expt_750_bf_scaffold_22391
Species: Chlamydia sp. 'Rubis' (50%)
2 1383 bp 34.13 1.81 100.22
Displaying items 151-200 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.