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SCNpilot_expt_750_bf_UNK

In projects: SCNPILOT_EXPT_750_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.95 Longest contig: 69.54 Kbp Bin length: 57.41 Mbp GC content: 55.10 %
Contigs count: 27580 Features count: 77384 rRNAs count: 26 tRNAs count: 617

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Displaying items 401-450 of 27580 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_31689
Species: Hyphomicrobium denitrificans (50%)
2 1038 bp 69.85 5.78 100.87
scnpilot_expt_750_bf_scaffold_14737
Species: Dyadobacter fermentans (100%)
2 1850 bp 54.05 3.78 100.87
scnpilot_expt_750_bf_scaffold_25159
Species: Flavobacterium subsaxonicum (50%)
2 1273 bp 37.08 3.14 100.86
scnpilot_expt_750_bf_scaffold_8647
Species: Dysgonomonas gadei (50%)
2 2671 bp 46.01 3.84 100.86
scnpilot_expt_750_bf_scaffold_16031
Species: Dysgonomonas mossii (100%)
3 1743 bp 35.40 2.29 100.86
scnpilot_expt_750_bf_scaffold_17554
Genus: Sphingobium (50%)
4 1633 bp 59.58 3.52 100.86
scnpilot_expt_750_bf_scaffold_31280
Species: Paracoccus sp. 5503 (50%)
2 1050 bp 58.19 3.57 100.86
scnpilot_expt_750_bf_scaffold_26695
Species: Pedobacter antarcticus (100%)
3 2234 bp 53.72 3.02 100.85
scnpilot_expt_750_bf_scaffold_27807
Species: Flavobacterium sp. AED (50%)
2 1178 bp 32.00 3.82 100.85
scnpilot_expt_750_bf_scaffold_24401
Species: Dyadobacter fermentans (100%)
2 1300 bp 47.23 3.08 100.85
scnpilot_expt_750_bf_scaffold_27638
Species: Oleiagrimonas soli (50%)
2 1184 bp 66.39 4.43 100.85
scnpilot_expt_750_bf_scaffold_8920
Genus: Flavobacterium (66.67%)
3 2615 bp 35.56 3.92 100.84
scnpilot_expt_750_bf_scaffold_24168
Species: Dyadobacter fermentans (100%)
2 1309 bp 49.05 4.20 100.84
scnpilot_expt_750_bf_scaffold_26348
Order: Pseudonocardiales (50%)
4 2026 bp 65.00 3.33 100.84
scnpilot_expt_750_bf_scaffold_27388
Species: Pseudomonas aeruginosa (75%)
4 1193 bp 71.75 429.59 100.84
scnpilot_expt_750_bf_scaffold_27399
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1193 bp 40.91 2.72 100.84
scnpilot_expt_750_bf_scaffold_7825
Species: Acetobacter orleanensis (66.67%)
3 2865 bp 55.29 2.88 100.84
scnpilot_expt_750_bf_scaffold_23936 2 1318 bp 57.59 1.90 100.84
scnpilot_expt_750_bf_scaffold_21146
Species: Methyloversatilis universalis (50%)
2 1443 bp 68.75 2.95 100.83
scnpilot_expt_750_bf_scaffold_11765
Species: Sphingobacterium spiritivorum (100%)
2 2166 bp 44.74 3.69 100.83
scnpilot_expt_750_bf_scaffold_23658
Species: Bosea sp. LC85 (100%)
3 1330 bp 66.92 3.95 100.83
scnpilot_expt_750_bf_scaffold_26854
Species: bacterium YEK0313 (50%)
2 1211 bp 60.53 3.10 100.83
scnpilot_expt_750_bf_scaffold_26768
Species: Burkholderia cenocepacia (100%)
2 1214 bp 64.42 4.53 100.82
scnpilot_expt_750_bf_scaffold_23493
Species: Shinella sp. DD12 (66.67%)
3 1336 bp 67.14 3.74 100.82
scnpilot_expt_750_bf_scaffold_12631
Species: Dyadobacter fermentans (100%)
3 2065 bp 51.62 3.15 100.82
scnpilot_expt_750_bf_scaffold_7925
Species: Pontibacter korlensis (50%)
4 2839 bp 44.45 3.96 100.81
scnpilot_expt_750_bf_scaffold_21636
Order: Rhizobiales (100%)
5 2101 bp 63.16 5.83 100.81
scnpilot_expt_750_bf_scaffold_5888
Species: Devosia geojensis (50%)
4 3476 bp 67.12 4.53 100.81
scnpilot_expt_750_bf_scaffold_8940
Species: Rhizobium sp. CF142 (50%)
2 2613 bp 61.92 3.83 100.80
scnpilot_expt_750_bf_scaffold_29351
Species: Enterococcus faecium (50%)
2 1122 bp 29.14 3.12 100.80
scnpilot_expt_750_bf_scaffold_15215
Species: Chryseobacterium gleum (75%)
4 2521 bp 38.00 3.17 100.79
scnpilot_expt_750_bf_scaffold_28810
Species: uncultured bacterium (50%)
2 1143 bp 55.12 4.59 100.79
scnpilot_expt_750_bf_scaffold_32239
Species: Sphingobium sp. SYK-6 (100%)
2 1018 bp 62.77 3.19 100.79
scnpilot_expt_750_bf_scaffold_32245
Order: Rhizobiales (66.67%)
3 1018 bp 70.33 2.95 100.79
scnpilot_expt_750_bf_scaffold_32161
Species: Rhodopseudomonas palustris (100%)
2 1021 bp 66.01 4.16 100.78
scnpilot_expt_750_bf_scaffold_32069
Species: Devosia limi (50%)
2 1024 bp 59.67 4.64 100.78
scnpilot_expt_750_bf_scaffold_24889
Species: bacterium YEK0313 (66.67%)
3 1283 bp 59.94 3.31 100.78
scnpilot_expt_750_bf_scaffold_31897
Species: Rhizobium freirei (100%)
2 1030 bp 59.03 4.85 100.78
scnpilot_expt_750_bf_scaffold_28319
Order: Rhodospirillales (66.67%)
3 1161 bp 35.31 3.66 100.77
scnpilot_expt_750_bf_scaffold_7003
Species: Candidatus Caedibacter acanthamoebae (75%)
4 3096 bp 39.76 7.83 100.77
scnpilot_expt_750_bf_scaffold_25565
Species: RLO_Burkholderiales_65_40 (66.67%)
3 1935 bp 62.33 4.26 100.77
scnpilot_expt_750_bf_scaffold_31533
Order: Burkholderiales (100%)
3 1042 bp 67.47 4.32 100.77
scnpilot_expt_750_bf_scaffold_31544
Species: Sphingobium sp. SYK-6 (100%)
2 1042 bp 71.79 5.04 100.77
scnpilot_expt_750_bf_scaffold_8308
Species: Rhodococcus rhodochrous (100%)
2 2742 bp 58.79 4.83 100.77
scnpilot_expt_750_bf_scaffold_12418
Species: Flavobacterium sp. CF136 (100%)
2 2090 bp 57.89 3.59 100.77
scnpilot_expt_750_bf_scaffold_24218
Species: Bosea sp. LC85 (66.67%)
3 1307 bp 62.05 3.44 100.76
scnpilot_expt_750_bf_scaffold_21001
Order: Burkholderiales (100%)
3 1450 bp 69.45 4.66 100.76
scnpilot_expt_750_bf_scaffold_36376
Species: GWF1_Flavobacteria_32_7_curated (50%)
2 1718 bp 35.86 3.06 100.76
scnpilot_expt_750_bf_scaffold_5962
Genus: Rhodanobacter (66.67%)
3 3445 bp 67.78 6.60 100.76
scnpilot_expt_750_bf_scaffold_9569
Order: Sphingobacteriales (50%)
4 4800 bp 48.23 20.89 100.75
Displaying items 401-450 of 27580 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.