ggKbase home page

scnpilot_expt_750_bf_scaffold_3320_3

Organism: SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_220

near complete RP 48 / 55 MC: 7 BSCG 48 / 51 MC: 7 ASCG 13 / 38 MC: 2
Location: comp(1378..3381)

Top 3 Functional Annotations

Value Algorithm Source
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] id=12493505 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.6
  • Coverage: 668.0
  • Bit_score: 1312
  • Evalue 0.0
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Pr similarity UNIPROT
DB: UniProtKB
  • Identity: 91.3
  • Coverage: 663.0
  • Bit_score: 1202
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 91.3
  • Coverage: 663.0
  • Bit_score: 1202
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2004
GTGGTGCACACGCAGTACGGCGTCGGCCAGTACCTCGGGCTCGTCAACATGGACCTCGGCGACGGCGACACCGAATTCCTGCAGCTGGAATATGCGAAGGGCGACAAGCTCTACGTGCCGGTCGCCAACCTGCATCTGATCTCGCGCTATTCCGGCGCCGGCGAAGGGGCGGCGCCACTGCATCGACTTGGCACCGACCAGTGGGACAAGGCGCGCCGCCGGGCGATGCAGGCCGCCCGCGACACCGCCGCCGAACTGCTCAATCTGTATGCCTTGCGCGCGGCGCGCGAAGGCCACGCATTCAAATTCTCGCCGCATGACTACGAAGCCTTCACCGAAGGTTTCGGCTACGAGGAAACCCCCGACCAGGCCGCGGCGATCGCGGCGGTCATGGCCGACATGCAGACGGGAAAACCGATGGACCGGCTGGTGTGCGGCGACGTCGGATTCGGCAAGACCGAGGTCGCGCTGCGCGCCGCCTTCATGGCGGTGATGGGCGGTTACCAGGTGGCCGTACTGGTCCCGACCACGCTCTTGGCCGAGCAGCACTTCAATAATTTCTCCGACCGCTTCTCCGCCTGGCCGGTGAAGCTGGCCGAGCTGTCGCGTTTCCGCAGCCCCAGAGAGCAGGCCGAGGCGCTGCAGGCGCTCGCCGACGGCAAGCTCGACATCGTCATCGGCACCCACCGGCTGATCCAGAAGGACGTGAAATTCGCGCGTCTGGGCCTGGTGATCCTGGACGAGGAACACCGCTTCGGGGTGCGCCAGAAGGAGCAGTTGAAGGCCCTGCGCGCCGAGGTGGATGTGCTGACCCTGACCGCCACGCCGATCCCGCGCACGCTGGCGATGTCGCTCGAAGGTATCCGCGATTTTTCGGTCATTGCCACCGCGCCGCAGAAGCGGCTGGCGATCAAGACCTTCGTGCACCCGTTTTCAAATGGCCTGATCCGCGAGGCGGTGTTGCGCGAACTGAAACGCGGCGGCCAGGTGTACTTTCTCCACAACGAGGTCAGCACCATCGAAACCATGCGCGAGCGCCTGGAAAAGCTGCTGCCCGAAGCACGCATCCGCGTCGGCCACGGCCAGATGGGCGAGCGTGAACTGGAACAGGTGATCCGCGATTTCTACCAGCAGCGCTACGACATCCTGCTGTGCACCACCATCATCGAGACCGGCATCGACATCCCGACCGCCAACACCATTCTCATCAACCGCGCCGACCGATTCGGCCTGGCGCAGCTGCATCAGCTAAGAGGCCGGGTCGGACGCTCGCATCACCAGGCCTTCGCCTACCTGCTGGTGGACGAGGACCGCTCCCTGACGCCGCAGGCAAAAAAACGCCTGGAAGCCATTCAACTGATGGAAGAACTCGGCTCCGGTTTTCATCTCGCCATGCAGGACCTGGAAATCCGCGGCGCCGGCGAAGTGCTGGGCGACAAGCAGAGCGGCGAGATTCTTGAAGTCGGCTTCCCGCTCTACAACGACATGCTGGCCGGCGCGGTGGCGAGCCTCAAGGCCGGCAAGGAGCCCGACATGAACCAGCCGCTCGGCGTCGTGTCGGAAATCAATCTGCACCTGCCCGCGCTGCTGCCGACGGATTACTGCCCCGACATCCACGAACGGCTGGTGCTGTACAAGCGGCTGGCGAGTTGCCAGACGCCTGACGATCTGACGGCGATGCAGGAAGAACTGATCGATCGTTTTGGCGCACTGCCCGATACGGCCCGTGCCCTGCTGGCCGTGCACCGTCTGCGCATGTCGACCCGCCCCTACGGCATTGCCCGGCTGGACGTGTCCGGCGAGGGCATGAACGTGCAATTCGTCCCCAACCCGCCCATCGATCCGGGTAGAATCCTCCAGTTGATCCAGGGCAAGGCCGGCTACCGGCTCGCCGGCCCCGACCGGCTGAAACTGGCCACGCCCCTGCCCGATGTCAACCGGCGGGTCGGTGCAGTCACCGCATTCCTCGCCGCGCTCGGCGATCCCATTCCAACCGAACCCTAA
PROTEIN sequence
Length: 668
VVHTQYGVGQYLGLVNMDLGDGDTEFLQLEYAKGDKLYVPVANLHLISRYSGAGEGAAPLHRLGTDQWDKARRRAMQAARDTAAELLNLYALRAAREGHAFKFSPHDYEAFTEGFGYEETPDQAAAIAAVMADMQTGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHFNNFSDRFSAWPVKLAELSRFRSPREQAEALQALADGKLDIVIGTHRLIQKDVKFARLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAIKTFVHPFSNGLIREAVLRELKRGGQVYFLHNEVSTIETMRERLEKLLPEARIRVGHGQMGERELEQVIRDFYQQRYDILLCTTIIETGIDIPTANTILINRADRFGLAQLHQLRGRVGRSHHQAFAYLLVDEDRSLTPQAKKRLEAIQLMEELGSGFHLAMQDLEIRGAGEVLGDKQSGEILEVGFPLYNDMLAGAVASLKAGKEPDMNQPLGVVSEINLHLPALLPTDYCPDIHERLVLYKRLASCQTPDDLTAMQEELIDRFGALPDTARALLAVHRLRMSTRPYGIARLDVSGEGMNVQFVPNPPIDPGRILQLIQGKAGYRLAGPDRLKLATPLPDVNRRVGAVTAFLAALGDPIPTEP*