04302015_17_7_28

Annotations

1. ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
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The search box searches a snapshot of the information in the database and does not support wild cards (e.g. '*' or '%').

You can search by gene name as follows:

• full gene name : UBA_LeptoII_Scaffold_8241_GENE_539
• contig/scaffold abbreviated : UBA_LeptoII_Scaff_8241_GENE_539 (or "cont" for contig)
• locus_id : UBAL2_82410539
• just scaffold or contig and a number : 8241_539
• organism and scaffold/contig and number : LeptoII_8241_539

You can also search by annotation - you can enter any word that might be found in the annotation fields. If the annotation for a gene is Ferredoxin oxidoreductase gamma subunit 517295:517993 forward MW:25534 you would get hits for any word:

• Ferredoxin
• oxidoreductase
• gamma
• subunit
• 517295:517993
• forward
• MW:25534

Any combinations of the above words work as well

• oxidoreductase gamma subunit

Finally, you can add in the organism name as well. To only find those oxidoreductases from A-plasma, you might search for either of these:

• aplasma oxidoreductase
• apl oxidoreductase