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SCNpilot_cont_300_bf_UNK

In projects: SCNPILOT_CONT_300_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.64 Longest contig: 289.70 Kbp Bin length: 117.09 Mbp GC content: 53.39 %
Contigs count: 52490 Features count: 150525 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 25 / 38 MC: 19
Displaying items 1801-1850 of 52490 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_23813
Species: Novosphingobium sp. MD-1 (100%)
2 1975 bp 65.67 4.83 100.10
SCNpilot_cont_300_bf_scaffold_55134 2 1978 bp 62.84 3.30 100.10
SCNpilot_cont_300_bf_scaffold_11521
Species: Polymorphum gilvum (50%)
4 2991 bp 66.30 22.41 100.10
SCNpilot_cont_300_bf_scaffold_59323
Species: Novosphingobium nitrogenifigens (50%)
2 1001 bp 76.42 4.51 100.10
SCNpilot_cont_300_bf_scaffold_59353
Species: Pseudomonas sp. 21 (100%)
2 1001 bp 69.03 3.26 100.10
SCNpilot_cont_300_bf_scaffold_59369
Species: Rhodanobacter denitrificans (50%)
2 1001 bp 67.53 3.51 100.10
SCNpilot_cont_300_bf_scaffold_59164
Species: Bradyrhizobium sp. STM 3843 (50%)
2 1004 bp 70.42 4.75 100.10
SCNpilot_cont_300_bf_scaffold_59171
Species: Streptomyces sp. PRh5 (50%)
2 1004 bp 75.50 4.00 100.10
SCNpilot_cont_300_bf_scaffold_59175
Species: Hyphomicrobium denitrificans (50%)
2 1004 bp 63.05 4.50 100.10
SCNpilot_cont_300_bf_scaffold_51435
Class: Alphaproteobacteria (50%)
4 2008 bp 65.69 4.25 100.10
SCNpilot_cont_300_bf_scaffold_59033
Species: Bosea sp. LC85 (100%)
2 1007 bp 69.22 2.99 100.10
SCNpilot_cont_300_bf_scaffold_23022
Species: Rhodococcus triatomae (50%)
2 2017 bp 72.34 5.23 100.10
SCNpilot_cont_300_bf_scaffold_58938
Species: BJP_IG2157_Actinomycetales_63_19 (50%)
2 1010 bp 73.66 8.95 100.10
SCNpilot_cont_300_bf_scaffold_25805
Species: Ahrensia sp. R2A130 (50%)
2 3045 bp 76.72 5.03 100.10
SCNpilot_cont_300_bf_scaffold_58632
Species: Afipia clevelandensis (100%)
2 1016 bp 61.52 4.69 100.10
SCNpilot_cont_300_bf_scaffold_58516
Species: Mesorhizobium sp. ORS3359 (50%)
2 1019 bp 51.91 5.42 100.10
SCNpilot_cont_300_bf_scaffold_58386
Species: BJP_08E140C01_Actinomycetales_70_11 (100%)
2 1022 bp 73.87 3.44 100.10
SCNpilot_cont_300_bf_scaffold_58238
Species: Ochrobactrum anthropi (100%)
2 1025 bp 58.24 3.43 100.10
SCNpilot_cont_300_bf_scaffold_22345
Species: Kutzneria sp. 744 (50%)
2 2053 bp 71.60 6.11 100.10
SCNpilot_cont_300_bf_scaffold_57842
Species: Nitrobacter winogradskyi (50%)
2 1034 bp 72.53 3.40 100.10
SCNpilot_cont_300_bf_scaffold_21809
Species: Rhodanobacter thiooxydans (100%)
2 2086 bp 69.51 2.41 100.10
SCNpilot_cont_300_bf_scaffold_21816
Species: Rhodothermus marinus (50%)
2 2086 bp 59.11 3.61 100.10
SCNpilot_cont_300_bf_scaffold_57454
Species: Brevundimonas nasdae (50%)
2 1043 bp 67.69 4.81 100.10
SCNpilot_cont_300_bf_scaffold_81246
Species: Rhizobium tropici (50%)
2 1043 bp 67.59 10.35 100.10
SCNpilot_cont_300_bf_scaffold_57289
Species: Agreia bicolorata (50%)
2 1046 bp 70.84 10.80 100.10
SCNpilot_cont_300_bf_scaffold_57137
Species: R_Alphaproteobacteria_66_14 (100%)
2 1049 bp 66.92 2.39 100.10
SCNpilot_cont_300_bf_scaffold_57149
Species: Granulicella tundricola (100%)
2 1049 bp 65.30 3.83 100.10
SCNpilot_cont_300_bf_scaffold_57009
Species: Labrenzia aggregata (50%)
2 1052 bp 69.49 6.92 100.10
SCNpilot_cont_300_bf_scaffold_56992
Species: Mesorhizobium sp. LNHC232B00 (50%)
2 1052 bp 68.92 12.88 100.10
SCNpilot_cont_300_bf_scaffold_10417
Species: Rhodanobacter denitrificans (66.67%)
3 3165 bp 70.46 5.55 100.10
SCNpilot_cont_300_bf_scaffold_56594
Species: Mesorhizobium amorphae (50%)
2 1061 bp 70.41 1.89 100.09
SCNpilot_cont_300_bf_scaffold_21098
Class: Alphaproteobacteria (66.67%)
3 2128 bp 68.09 3.30 100.09
SCNpilot_cont_300_bf_scaffold_56446
Species: Nitratireductor indicus (100%)
2 1064 bp 62.22 2.59 100.09
SCNpilot_cont_300_bf_scaffold_20967
Species: Mesorhizobium alhagi (50%)
2 2137 bp 62.75 4.11 100.09
SCNpilot_cont_300_bf_scaffold_56058
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1073 bp 42.96 2.81 100.09
SCNpilot_cont_300_bf_scaffold_56082
Species: Delftia acidovorans (100%)
2 1073 bp 60.58 2.34 100.09
SCNpilot_cont_300_bf_scaffold_20564
Species: Sphingopyxis fribergensis (50%)
2 2161 bp 71.40 3.60 100.09
SCNpilot_cont_300_bf_scaffold_30818
Species: Burkholderia cenocepacia (50%)
2 2170 bp 69.22 51.47 100.09
SCNpilot_cont_300_bf_scaffold_55370
Species: Polymorphum gilvum (50%)
2 1088 bp 69.30 10.15 100.09
SCNpilot_cont_300_bf_scaffold_55383
Species: Bradyrhizobium sp. STM 3809 (50%)
2 1088 bp 67.37 12.69 100.09
SCNpilot_cont_300_bf_scaffold_20215
Species: Sphingobium sp. SYK-6 (50%)
2 2185 bp 61.01 4.25 100.09
SCNpilot_cont_300_bf_scaffold_55113
Species: Kineococcus radiotolerans (100%)
2 1094 bp 67.92 8.95 100.09
SCNpilot_cont_300_bf_scaffold_55118
Species: RLO_RIF_OD1_13_41_11 (50%)
2 1094 bp 68.46 2.98 100.09
SCNpilot_cont_300_bf_scaffold_89938
Species: Mesorhizobium loti (50%)
2 1094 bp 71.02 4.13 100.09
SCNpilot_cont_300_bf_scaffold_55094
Species: Bradyrhizobiaceae bacterium SG-6C (50%)
2 1094 bp 63.89 4.13 100.09
SCNpilot_cont_300_bf_scaffold_54948
Species: Pseudomonas fluorescens (50%)
2 1097 bp 61.99 3.43 100.09
SCNpilot_cont_300_bf_scaffold_54951
Species: Microbacterium hominis (50%)
2 1097 bp 73.66 4.58 100.09
SCNpilot_cont_300_bf_scaffold_54955
Species: Pseudomonas sp. 21 (100%)
2 1097 bp 66.91 3.43 100.09
SCNpilot_cont_300_bf_scaffold_57101
Species: Zavarzinella formosa (50%)
2 2194 bp 71.70 5.49 100.09
SCNpilot_cont_300_bf_scaffold_9714
Species: Sphingomonas taxi (50%)
2 3297 bp 64.88 4.80 100.09
Displaying items 1801-1850 of 52490 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.