ggKbase | organisms

SCNpilot_cont_300_bf_UNK

In projects: SCNPILOT_CONT_300_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.64 Longest contig: 289.70 Kbp Bin length: 117.09 Mbp GC content: 53.39 %

Contigs count: 52490 Features count: 150525 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 25 / 38 MC: 19

Displaying items 51801-51850 of 52490 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_300_bf_scaffold_23951 Class: Gammaproteobacteria (50%)	4	1968 bp	68.14	6.38	100.76
SCNpilot_cont_300_bf_scaffold_30914 Species: Ochrobactrum anthropi (100%)	2	2227 bp	60.08	5.18	100.76
SCNpilot_cont_300_bf_scaffold_51135 Species: Ochrobactrum anthropi (100%)	2	1179 bp	58.78	2.98	100.76
SCNpilot_cont_300_bf_scaffold_44517 Order: Rhizobiales (100%)	3	1307 bp	67.64	3.26	100.76
SCNpilot_cont_300_bf_scaffold_34523 Class: Alphaproteobacteria (100%)	3	1560 bp	71.09	4.02	100.77
SCNpilot_cont_300_bf_scaffold_34705 Species: Rhodopseudomonas palustris (50%)	2	1554 bp	64.48	4.52	100.77
SCNpilot_cont_300_bf_scaffold_45496 Species: Agrobacterium tumefaciens (100%)	2	1286 bp	64.77	2.73	100.78
SCNpilot_cont_300_bf_scaffold_39851	3	1414 bp	62.45	2.84	100.78
SCNpilot_cont_300_bf_scaffold_33045 Species: Capitella teleta (50%)	2	2569 bp	31.65	4.01	100.78
SCNpilot_cont_300_bf_scaffold_39985 Species: Flavobacterium hibernum (50%)	2	1411 bp	27.21	3.56	100.78
SCNpilot_cont_300_bf_scaffold_10942 Genus: Flavobacterium (100%)	5	3078 bp	35.61	3.34	100.78
SCNpilot_cont_300_bf_scaffold_40069 Species: Ochrobactrum anthropi (100%)	2	1408 bp	57.46	3.74	100.78
SCNpilot_cont_300_bf_scaffold_40096 Species: Hydra vulgaris (50%)	2	1408 bp	30.61	2.85	100.78
SCNpilot_cont_300_bf_scaffold_58298 Species: Novosphingobium sp. MD-1 (100%)	2	1024 bp	71.09	4.66	100.78
SCNpilot_cont_300_bf_scaffold_22533 Species: Burkholderia sp. RPE67 (50%)	2	2042 bp	62.54	4.18	100.78
SCNpilot_cont_300_bf_scaffold_52946 Species: Afipia sp. P52-10 (100%)	2	1143 bp	60.63	4.61	100.79
SCNpilot_cont_300_bf_scaffold_71472	4	1387 bp	70.08	4.71	100.79
SCNpilot_cont_300_bf_scaffold_59397 Species: Sphingomonas parapaucimobilis (50%)	2	1637 bp	59.87	4.60	100.79
SCNpilot_cont_300_bf_scaffold_19040 Species: Rhodovulum sp. PH10 (66.67%)	3	2265 bp	71.74	3.21	100.79
SCNpilot_cont_300_bf_scaffold_21002	4	2134 bp	67.62	29.29	100.80
SCNpilot_cont_300_bf_scaffold_37815 Species: Bradyrhizobiaceae bacterium SG-6C (50%)	4	1881 bp	65.60	4.27	100.80
SCNpilot_cont_300_bf_scaffold_25832 Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (50%)	2	1875 bp	64.59	3.88	100.80
SCNpilot_cont_300_bf_scaffold_56097 Genus: Mesorhizobium (66.67%)	3	1494 bp	63.92	3.53	100.80
SCNpilot_cont_300_bf_scaffold_19889 Domain: Bacteria (66.67%)	3	4726 bp	73.36	5.95	100.80
SCNpilot_cont_300_bf_scaffold_54017	3	1119 bp	70.06	32.75	100.80
SCNpilot_cont_300_bf_scaffold_54032 Species: Meleagris gallopavo (50%)	2	1119 bp	34.85	3.59	100.80
SCNpilot_cont_300_bf_scaffold_54050	3	1119 bp	32.35	3.59	100.80
SCNpilot_cont_300_bf_scaffold_21399	4	2110 bp	67.11	7.61	100.81
SCNpilot_cont_300_bf_scaffold_60122 Species: Thauera sp. SWB20 (50%)	2	1604 bp	59.66	3.76	100.81
SCNpilot_cont_300_bf_scaffold_23903 Species: Adineta vaga (100%)	2	1970 bp	34.16	4.33	100.81
SCNpilot_cont_300_bf_scaffold_55424 Domain: Bacteria (66.67%)	3	2458 bp	62.12	3.37	100.81
SCNpilot_cont_300_bf_scaffold_56681 Species: Leifsonia rubra (50%)	2	1842 bp	74.70	4.36	100.81
SCNpilot_cont_300_bf_scaffold_66478	2	1342 bp	31.59	4.30	100.82
SCNpilot_cont_300_bf_scaffold_20085	3	2196 bp	56.01	5.26	100.82
SCNpilot_cont_300_bf_scaffold_38009 Species: Rhodobacter capsulatus (50%)	2	1461 bp	69.75	3.61	100.82
SCNpilot_cont_300_bf_scaffold_55060 Species: Adineta vaga (50%)	2	1095 bp	30.96	5.50	100.82
SCNpilot_cont_300_bf_scaffold_55173 Phylum: Proteobacteria (66.67%)	3	1092 bp	62.91	4.37	100.82
SCNpilot_cont_300_bf_scaffold_43450 Species: Bradyrhizobium sp. LTSP849 (50%)	2	1330 bp	72.18	6.98	100.83
SCNpilot_cont_300_bf_scaffold_49636 Species: GWF1_OD1_35_5 (50%)	2	1208 bp	31.29	2.91	100.83
SCNpilot_cont_300_bf_scaffold_49762 Species: Lygus hesperus (50%)	2	1205 bp	37.34	3.12	100.83
SCNpilot_cont_300_bf_scaffold_30675 Species: Sphingobium sp. SYK-6 (100%)	2	1684 bp	66.15	6.26	100.83
SCNpilot_cont_300_bf_scaffold_27524 Genus: Streptomyces (66.67%)	3	1803 bp	68.89	4.59	100.83
SCNpilot_cont_300_bf_scaffold_34544 Species: Caulobacter vibrioides (50%)	2	1559 bp	69.53	7.41	100.83
SCNpilot_cont_300_bf_scaffold_55271 Genus: Microvirga (66.67%)	3	1678 bp	63.77	3.89	100.83
SCNpilot_cont_300_bf_scaffold_50405 Species: Stanieria cyanosphaera (50%)	2	1193 bp	33.86	3.16	100.84
SCNpilot_cont_300_bf_scaffold_72842 Species: Patulibacter medicamentivorans (50%)	2	1431 bp	75.12	5.26	100.84
SCNpilot_cont_300_bf_scaffold_50324 Species: Mesorhizobium loti (100%)	2	2264 bp	67.18	3.44	100.84
SCNpilot_cont_300_bf_scaffold_28047 Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)	2	1782 bp	65.32	3.10	100.84
SCNpilot_cont_300_bf_scaffold_23078 Species: Mesorhizobium sp. L2C084A000 (66.67%)	3	2014 bp	67.38	5.73	100.84
SCNpilot_cont_300_bf_scaffold_21163 Species: Bosea sp. LC85 (100%)	3	2124 bp	67.33	3.78	100.85

Displaying items 51801-51850 of 52490 in total

SCNpilot_cont_300_bf_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_300_bf_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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