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SCNpilot_expt_300_bf_scaffold_44_14

Organism: SCNPILOT_EXPT_300_BF_Xanthomonadales_68_49

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(19548..20027)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Dyella ginsengisoli RepID=UPI00034D49BB similarity UNIREF
DB: UNIREF100
  • Identity: 98.7
  • Coverage: 159.0
  • Bit_score: 309
  • Evalue 2.00e-81
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 97.5
  • Coverage: 159.0
  • Bit_score: 305
  • Evalue 6.40e-81
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xa similarity UNIPROT
DB: UniProtKB
  • Identity: 97.5
  • Coverage: 159.0
  • Bit_score: 305
  • Evalue 3.20e-80

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Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
ATGATCGAGACGATCAACAAGCTCAACCGCATTTCCCGCCAGATGCTCCAGCAGTACGGCCGCGAGGCCACGCCGGAGGAGCTGGCGAAGGAAATGGACATGCCCGAGGACAAGATCCGCAAGGTGCTGAAGATCGCCAAGGAGCCGATCTCCATGGAAACCCCGATCGGCGACGACGAGGATTCCCACCTCGGCGACTTCATCGAGGACAGCAACGCCAGCTCGCCGATCGACTCCGCCACCGAGACCGGCCTGATGGAAACCGTGCGCGACGTGCTCGCCGGCCTTACGCCGCGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGACATGAATACCGACCACACGCTGGAAGAAGTCGGCAAGCAGTTCGACGTCACCCGCGAGCGCATCCGCCAGATCGAAGCCAAGGCGCTGCGCAAGCTGCGCCACCCCAGCCGCTCCGAGCAGCTGCGCTCCTTCCTCGACGTGGATTGA
PROTEIN sequence
Length: 160
MIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNASSPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDVD*