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SCNpilot_expt_300_bf_scaffold_2747_2

Organism: SCNPILOT_EXPT_300_BF_Rotifera_33_5

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3
Location: 2244..3887

Top 3 Functional Annotations

Value Algorithm Source
Low density lipoprotein receptor n=1 Tax=Philodina roseola RepID=B2L3N0_PHIRO similarity UNIREF
DB: UNIREF100
  • Identity: 39.2
  • Coverage: 549.0
  • Bit_score: 399
  • Evalue 6.70e-108
Low density lipoprotein receptor {ECO:0000313|EMBL:ACC43983.1}; TaxID=96448 species="Eukaryota; Metazoa; Lophotrochozoa; Rotifera; Bdelloidea; Philodinida; Philodinidae; Philodina.;" source="Philodina similarity UNIPROT
DB: UniProtKB
  • Identity: 39.2
  • Coverage: 549.0
  • Bit_score: 399
  • Evalue 9.40e-108

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Taxonomy

Philodina roseola → Philodina → Philodinida → Bdelloidea → Rotifera → Metazoa

Sequences

DNA sequence
Length: 1644
ATGTATTCACGAAATCAATTGATATGCTTATGTCCTCAAGGATTTTTCGGTATCCATTGTCAATGGCCGAGTTCAAAAATTGAAATAACATTCAAACAATTAGAAATTCCTCGTTCACTTCGTATTCATTTTCTCGCTGTAGAAAAACATGGTGATCCCTTACATACAATCATATCGACAAAAATCCCGTTTGATCGTGATTTTGCTGAAATTTATATCTCAGTTTCGTTTCATTTGATTATTACACAACTATCGACTGAATACTATTTAATCTATATCAATTCACATTATAATTATTCATCATTACGAACTCTTTCAATGACTTCAAAACAACAATGTTTACACACGAATAATTTCTTTCATAATGAAACCATTCGAACATATCCATTGTTATATCGTGTCAAATATTATCATTTATTTTGTCGAAATCATTCTCAATTGAAATGTTTTCATGACAATGAAGAATACATGTGTCTCTGTAATGAAGAAAGATTTGCCAATTGTTTTCCATTTAATTTTCAAAATAAATCGACATGTAAGAAAACGACTGATTGTTTAAATGGTGGTCAATGTTTTTCAGAGCGTCCATATTGTCCTCATTCAGTGTCTTGTGTTTGTACTGATTGTTTCTACGGAAGTAAATGTCAATTTACGAGCAAAGGATTTGGTCTTTCACTTGATATGATACTTGGATATCATATTCGACCGAAAGTATCCATTCCTCAACAACCAATTATTGTCAAAACATCGATTGGACTCACTGTACTTATGTTTATTTTTGGTATAGTTAATAGTATTTTATCAATTATTACATTTCGAAAACGAAAAGCAGGTGAACCTGGTTGTCGACAGTATTTATTGGCAATATCGATTATTTCATTATTTATAATAATTCTATTTTCAATCAAATTGTTAATGTTAATACTTTCACAATTATCAATCATTGTAAATATGATCGTCCTGAAGATTTCTTGTATCTCAATTGATTGTTTACTTCGTTTGTGTTTAATTATTGCTGATTGGTTCGCAGCAAGTGTATCGATCGAACGATTACTTACGATTACTTTAGGTATTAAATTTAATAAGGAAAAAAGTCGAAATGCAGTTAAATGGACAATTAGTAGTATTGTTTTAGTTGGTATTTTGAGTATTCTACATGATCCTATCTATCGAACAATCATCTATGATAATGACGAAGATCGACGATGGTGTATTGTTCAATATCCATCAGCAGCATTGGAAATATACAATTCAGTTATTAATATTATACATTTTTTTGTTCCATTTGGAATAAATTTTCTCGTTGGACTTCTTATTATTTTTTTTGCTGCTCGAACACGATCAGCAGCTCATCCAGATCAAACCTATTCTCAAGTTCTAAAACAACAATTTAGCGAATATAAACATTTAATTATGAGTTCACTTTCACTTGTTCTACTTGCGACGCCTCGTCTAGTTATTTCATTTACTTCTGGTTGTATGAAATCACCGCGAAATTCTTCATTATACTTAGCCGGTTATTTCATATCGTTTATTCCATCATGTTTAACATTTTTCACTTTTATCTTACCTTCAAAATTGTACATGGAAAATTTTACCACAGCAACTAAGATAATAACTGTTTTATTTAAACGAAAACAATGA
PROTEIN sequence
Length: 548
MYSRNQLICLCPQGFFGIHCQWPSSKIEITFKQLEIPRSLRIHFLAVEKHGDPLHTIISTKIPFDRDFAEIYISVSFHLIITQLSTEYYLIYINSHYNYSSLRTLSMTSKQQCLHTNNFFHNETIRTYPLLYRVKYYHLFCRNHSQLKCFHDNEEYMCLCNEERFANCFPFNFQNKSTCKKTTDCLNGGQCFSERPYCPHSVSCVCTDCFYGSKCQFTSKGFGLSLDMILGYHIRPKVSIPQQPIIVKTSIGLTVLMFIFGIVNSILSIITFRKRKAGEPGCRQYLLAISIISLFIIILFSIKLLMLILSQLSIIVNMIVLKISCISIDCLLRLCLIIADWFAASVSIERLLTITLGIKFNKEKSRNAVKWTISSIVLVGILSILHDPIYRTIIYDNDEDRRWCIVQYPSAALEIYNSVINIIHFFVPFGINFLVGLLIIFFAARTRSAAHPDQTYSQVLKQQFSEYKHLIMSSLSLVLLATPRLVISFTSGCMKSPRNSSLYLAGYFISFIPSCLTFFTFILPSKLYMENFTTATKIITVLFKRKQ*