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SCNpilot_expt_300_bf_scaffold_3847_6

Organism: SCNPILOT_EXPT_300_BF_Rotifera_33_5

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3
Location: comp(3515..5233)

Top 3 Functional Annotations

Value Algorithm Source
Predicted protein n=1 Tax=Hordeum vulgare var. distichum RepID=F2DGY1_HORVD similarity UNIREF
DB: UNIREF100
  • Identity: 75.3
  • Coverage: 574.0
  • Bit_score: 857
  • Evalue 7.20e-246
  • rbh
Predicted protein {ECO:0000313|EMBL:BAJ94352.1}; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP similarity UNIPROT
DB: UniProtKB
  • Identity: 75.3
  • Coverage: 574.0
  • Bit_score: 861
  • Evalue 9.20e-247
GE14955 gene product from transcript GE14955-RA; K12829 splicing factor 3B subunit 2 similarity KEGG
DB: KEGG
  • Identity: 52.1
  • Coverage: 555.0
  • Bit_score: 510
  • Evalue 6.80e-142
  • rbh

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Taxonomy

Hordeum vulgare → Hordeum → Poales → commelinids → Streptophyta → Viridiplantae

Sequences

DNA sequence
Length: 1719
ATGCTTATAGATTGGTCTGTTCCCGGTCGAAATACGAATGCTAACGGTCCGCCACCACTCATGGGTTTGCCCAATCGAGTTCGTTTCTTTTTTTTTCTCCTTTTTCCTTTTCAAATCTCGTTTTTTGCTTTTCTTCAGGATGAAATTCGTTTTCCATCGACAATGGAACGTGTTTTGAGATTTCGTGATAATCAACACGAAGAAGATCGTGTTGCTCGTTTACACGGTCAATCACATACAGGTGGCGGCAGTCAAACTGATTCCGGTATCGAACAAAACGAAGAAAATGATGATGATGAAGACGATGACGATGAAACTGATCAAACTCAAACGAATTTATCACGAAAAGCAAAGAAAGAAATCGAAAAACGACGTCGTCGTCGAGCGAAAAAGAAAACCAAAATACCAGCACCTACTCCTGCTGCTGCTGCTGTTGCTGCTCCTCCTTCTCCTCCACCACCAGCATCACGAAAAGAGTCGGATAAAAAGAAAAAATCGAAAAAACACGAGTCCGATGACGAAGACGATCCCAATGTCGAGATCGAATACGTTCCCGAAGATCTTCCGATTAAACGAGGCGATGGCTACTATTCACATTTCGTTAAAGTCTTCGAAAGTTTCAAATTAGACCCCAATGCCGATGAAAACCAAGAGTATTATTACAACAAAGACGGCAAGAGAGTTCTTCGACCGAAAGCACCTTTGCCACGTGATAAAACCAATCTTGACGAAAATGAAGATGAAGAAGACGATGACGATGATGAACAAGCAGATCAAGGCAAACAACTCAACAATGATGACGAACAAAATAAGAAACGATCGAAAAAACAAATGAAACGTGAAACTCGAATGTCGGTCGCTCAATTGAAACAATTAGTTGTACGACCTGACGTCGTCGAAATGTTCGACGTCACAGCTAAAGATCCGAAATTACTCGTTCATCTCAAAGCAACGAGAAACACAGTCCCAGTGCCACGTCATTGGAGTGCCAAACGAAAATATCTTCAAGGCAAACGTGGCATTGAAAAGCCACCGTTTCAATTACCAGACTTCATTCGACGAACTGGTATCATGGAAATGCGTGAAGCTTTACAGGAAAAAGAACAAAACAAAACATTGAAACAGAAAATGCGTGAAAAAGTCCGACCGAAACTGGGCAAAATCGATATCGATTATCAGAAATTGCACGATGCTTTCTTTCGTTGGCAAACTAAACCACGAATGTCGATTCACGGCGATCTCTACTACGAAGGCAAAGAAAATGAAACTCGTTTGAAAGACAAAAAACCGGGCATTCTCAGCGAAGAACTTCGTGTTGCATTAGGCATACCGGTTGGACCAACAGCAGACAAATATCCACCGCCATGGCTGATCGCCATGCAACGTTACGGGCCACCGCCGAGTTATCCAAATTTAAAAATTGCCGGTTTGAATGCACCGATACCTGAAGGTTGCCAATTCGGTTATCATAGCGGCGGATGGGGAAAGCCGCCGGTTGATGAACACGGTCGGCCATTGTACGGCGACGTTTTCGGTACGAATCAGTTTGCTTATATCAGAAATTTGACTGAGGAAGAAAATATTGATAAGAGTTATTGGGGTGAAATTGAAGAAGAAGAACAAGAACAAGATGTGATGAGCTCGTCCGAAGAAGAAGAAGCGAACGGAAGGACAAATGTCGGCGCCGACAGCGAGTGCGCATCATCATCATCCAGTTGA
PROTEIN sequence
Length: 573
MLIDWSVPGRNTNANGPPPLMGLPNRVRFFFFLLFPFQISFFAFLQDEIRFPSTMERVLRFRDNQHEEDRVARLHGQSHTGGGSQTDSGIEQNEENDDDEDDDDETDQTQTNLSRKAKKEIEKRRRRRAKKKTKIPAPTPAAAAVAAPPSPPPPASRKESDKKKKSKKHESDDEDDPNVEIEYVPEDLPIKRGDGYYSHFVKVFESFKLDPNADENQEYYYNKDGKRVLRPKAPLPRDKTNLDENEDEEDDDDDEQADQGKQLNNDDEQNKKRSKKQMKRETRMSVAQLKQLVVRPDVVEMFDVTAKDPKLLVHLKATRNTVPVPRHWSAKRKYLQGKRGIEKPPFQLPDFIRRTGIMEMREALQEKEQNKTLKQKMREKVRPKLGKIDIDYQKLHDAFFRWQTKPRMSIHGDLYYEGKENETRLKDKKPGILSEELRVALGIPVGPTADKYPPPWLIAMQRYGPPPSYPNLKIAGLNAPIPEGCQFGYHSGGWGKPPVDEHGRPLYGDVFGTNQFAYIRNLTEEENIDKSYWGEIEEEEQEQDVMSSSEEEEANGRTNVGADSECASSSSS*