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SCNpilot_expt_300_bf_scaffold_2087_7

Organism: SCNPILOT_EXPT_300_BF_Devosia_66_6_partial

partial RP 7 / 55 BSCG 5 / 51 ASCG 4 / 38
Location: comp(5665..5991)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-24 subunit of RNA polymerase, ECF subfamily protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QH96_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 61.5
  • Coverage: 78.0
  • Bit_score: 102
  • Evalue 2.00e-19
RNA polymerase sigma70 factor {ECO:0000313|EMBL:KKB13247.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.; similarity UNIPROT
DB: UniProtKB
  • Identity: 68.2
  • Coverage: 85.0
  • Bit_score: 119
  • Evalue 2.80e-24
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 60.5
  • Coverage: 81.0
  • Bit_score: 100
  • Evalue 3.60e-19

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Taxonomy

Devosia geojensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 327
ATGACCACTGCCATCGGACCATTGCTGATCGACGCGCTGCCGCGGCTCCGCCGCTACGCCCTCTCGCTGGCGCGAGCCGCCGACGTCGCCGACGACCTGGTGCAGGCGGCTTGTGAGCGCGCCCTCGCCACCGCCGCGACGCTCGACGATCGGCAACGCTTCGACGCCTGGATGTTCCGGATCGTCCGCAACCTCTGGTACGACCGGCTGAGACGGCTCAGAACGCGTGGCGAAGAGTTCGATGTCACGGCCAGGCCGCCGCGGCGATCGACCGACTGCCGGACGACCAGCGCGAACTGCTGCTGCTGGTCTGTGTCGAGGAGCTGA
PROTEIN sequence
Length: 109
MTTAIGPLLIDALPRLRRYALSLARAADVADDLVQAACERALATAATLDDRQRFDAWMFRIVRNLWYDRLRRLRTRGEEFDVTARPPRRSTDCRTTSANCCCWSVSRS*