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SCNpilot_expt_300_bf_scaffold_7177_10

Organism: SCNPILOT_EXPT_300_BF_Rhodospirillales_66_5_fragment

partial RP 25 / 55 BSCG 21 / 51 ASCG 2 / 38
Location: comp(4957..5364)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EP46_METSB similarity UNIREF
DB: UNIREF100
  • Identity: 56.5
  • Coverage: 115.0
  • Bit_score: 122
  • Evalue 3.90e-25
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 56.5
  • Coverage: 115.0
  • Bit_score: 122
  • Evalue 1.10e-25
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACK49284.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 56.5
  • Coverage: 115.0
  • Bit_score: 122
  • Evalue 5.50e-25

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Taxonomy

Methylocella silvestris → Methylocella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 408
GTGTTCAGCCCGGGTGATCTCTCTACGCTCATGCGAGCGGCGCGCCGGGGCGACGACGAGGCCTATCGGCGACTGCTGACCGAGGTCGCCACGTGGCTGCGCGGGATCGCCCGGCGTGGCCTCGCGACGGCAGGGCGAGGAAGCGACGACAGCGAGGACATCGTTCAGGAAACGCTGCTGGCCATGCATCTGAAACGCGACACCTGGGACGAAACCCAACCGATCGAACCGTGGCTGCGCGCGATCGCGCATCACAAGCTGGTGGATCACCTGCGCCGCCGCGGCTTCGCGCGGCATCTGGACATCGAGGATTTCGCCGACACCTTGGGGAACGCCAGCGGCGCATCGTCGAGAGCATCTCCATGGAAGGACAAAGTGCGCGCGACGTCGGTGTCCGGCTGGGCATGA
PROTEIN sequence
Length: 136
VFSPGDLSTLMRAARRGDDEAYRRLLTEVATWLRGIARRGLATAGRGSDDSEDIVQETLLAMHLKRDTWDETQPIEPWLRAIAHHKLVDHLRRRGFARHLDIEDFADTLGNASGASSRASPWKDKVRATSVSGWA*