ggKbase home page

SCNpilot_expt_300_bf_scaffold_701_5

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_62_448

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: comp(2686..4986)

Top 3 Functional Annotations

Value Algorithm Source
RNAse R (EC:3.1.-.-) similarity KEGG
DB: KEGG
  • Identity: 91.1
  • Coverage: 766.0
  • Bit_score: 1411
  • Evalue 0.0
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=292415 species="Bacteria; Proteobacteria; Beta similarity UNIPROT
DB: UniProtKB
  • Identity: 91.1
  • Coverage: 766.0
  • Bit_score: 1411
  • Evalue 0.0
exoribonuclease R n=1 Tax=Thiobacillus thioparus RepID=UPI00036BCC7F similarity UNIREF
DB: UNIREF100
  • Identity: 96.2
  • Coverage: 766.0
  • Bit_score: 1486
  • Evalue 0.0
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2301
ATGACTTCAAAAAAATCCCGCAGCCGCGCCAGCAAGCACAAGATCCCGGCAATCCGTCTGGCCGACCCGTTCTACGAACGTGAAGTCGAGCGTTACGAATCGCCCTTGCCGAGCCGCGAATACGTCCTGCAGTTGATCACCGAGGCGGGCTGCCCGGTCGATGTCGATGCGTTTGCCGAACAGCTGCACATCACCGAGGCCGAGCGCGACCTGTTCCAGCGCCGTCTCGGCGCGATGCAGCGCGACGGTCAGCTGATGCTCAATCGCAAGCGCCAGCTGTGCCTGCCGGACAAGCTCGATCTGATCAAGGGCCGGGTCGAAGGCCACCCGGACGGCTTCGGCTTCGTGGTGCCGGAAGAGGGCGGCGACGACCTCTTCCTGTCGCCCAAGGAAATGCACCGCGTGCTGCACGGCGACAAGGTCCTGGTGCGGGTCGCCGGCTTCGACAAGCGCGGCCGCCGCGAGGCCAAGATCGTCGAAGTGCTGGAGCACGTCAACCAGTTCGTCGTCGGCCGCTACTACCTCGAAGGCGGCGTCGGCTTCCTCATCGCGGAGAACCGCCGCATCAACCAGGATATTCTGGTTCCCACGGAAAATGCGGGTGCCGCAAAATCCGGCCAGGTCGTCACGGTGGAAATCGTCACCCAGCCCGGCGCGCACAACGAGGCCGTCGGCCGCGTCACCGAGATTCTGGGCAGCTTCACCGGCCCGGGCATGGAAATCGAGATTGCGTTGCGCAAGCACGACCTGCCCTACGTGTTCCCACCCGAGGTCGAGGCGCAGGCGTCCAAGCTGCCGGGCAAGGTGCAGAAAAAGGACATGGCTGGCCGCGAGGACATCCGCCATCTGCCGCTCGTCACCATCGACGGCGAGACTGCACGCGACTTCGACGACGCGGTGTACTGCGAGCCGCTCGGCCGCAGCGGCTACCGCCTGATCGTGGCGATCGCCGACGTCAGCCATTACGTCAAGCCCAAGGATGCGCTCGACAGCGAGGGCTTCAACCGTGGCAACTCGGTGTACTTCCCGCGCCGCGTCATTCCCATGCTGCCCGAGGCGCTGTCCAACGGCCTCTGCTCGCTCAATCCGGAAGTCGACCGCCTTTCCATGGTGTGCGACATGCGCATCACCACCGCGGGCAGCATCAAGGAATACCGCTTCTACCCGGCGGTGATCTATTCGCACGCGCGGCTGACCTACAACCAGGTGTGGGACTGGCTCTCCGGCGGCACCAGGCCGGAGAAAAAGCACGCCGCACTGATGCCGCACCTGGAATCGCTCGACAAGCTGTTCCGCACCCTCTTGAAGGCACGCGCCAAGCGCGGCGCGATCGACTTCGGCTCGACCGAGACGCAGATCATTTTCGACGACAACGGCAAGATCAAGGAGATCGTGCCGGTGATCCGCAACGACGCCCACCGCATCATCGAGGAATGCATGCTGGCGGCCAACGTCTGCGCTTCGGACTTCCTGCACGAGAACAAGCAGCCGGCGCTGTTCCGCGTCCACGAAGGCCCGACGCCGGAGAAGCTCGCCGCGCTGCGCGGCTTCCTCGCTGAATTCGGCCTCGACCTCGGCGGCGGCGACAAGCCGCACGCCAAGGATTACGCCGCGCTGCTGGAGAAGATCAAGGACCGCCCCGACCACGGCCTGCTGCAGACCGTGATGCTGCGCTCGCTCAGGCAGGCAATCTACAGCCCGGACAACAAGGGCCACTTCGGCCTGGCGTACGAGGCCTACACCCACTTCACCTCGCCGATCCGCCGCTATCCCGATCTGCTGGTGCACCGCGGCATCAAGGCCGTGCTGCTGGGCGAGAAACTGCCCGCCAAGGGTCTGGCGGAAATCGGCGCCCACTGCTCGATGACCGAGCGCCGCGCCGACGACGCCACCCGCGACGTCGACGCCTGGCTGAAGACCTACTTCATGCAGGACCGCATCGGCGACGAATACAACGGCACCGTGAGCGCGGTGACCAGCTTCGGCATGTTCGTCGCGATCGACGACATCTTCATCGAAGGCCTGGTCCACGTCTCCGAACTCGGCCAGGACTACTTCCACTACGACCAGGCCAAGCACATGATGCTCGGCGAGCGGACCGGAAAAAAATATCGCCTGGGCGACCGTGTGCGCATCAAGGTGATGCGCGCCGACATCGAGACCAGCAAGATCGATTTCAGCCTGGTCGAGCAGGAAAACTCCGCCCTCGACATGCAGCGCGCATTCGCGCAATCGGCGTCGGAAAAGAAATCCTCCAAGCCTCGGTCCGCCAAATCCAGGTCGGGTAGCAAGCAGAAATGA
PROTEIN sequence
Length: 767
MTSKKSRSRASKHKIPAIRLADPFYEREVERYESPLPSREYVLQLITEAGCPVDVDAFAEQLHITEAERDLFQRRLGAMQRDGQLMLNRKRQLCLPDKLDLIKGRVEGHPDGFGFVVPEEGGDDLFLSPKEMHRVLHGDKVLVRVAGFDKRGRREAKIVEVLEHVNQFVVGRYYLEGGVGFLIAENRRINQDILVPTENAGAAKSGQVVTVEIVTQPGAHNEAVGRVTEILGSFTGPGMEIEIALRKHDLPYVFPPEVEAQASKLPGKVQKKDMAGREDIRHLPLVTIDGETARDFDDAVYCEPLGRSGYRLIVAIADVSHYVKPKDALDSEGFNRGNSVYFPRRVIPMLPEALSNGLCSLNPEVDRLSMVCDMRITTAGSIKEYRFYPAVIYSHARLTYNQVWDWLSGGTRPEKKHAALMPHLESLDKLFRTLLKARAKRGAIDFGSTETQIIFDDNGKIKEIVPVIRNDAHRIIEECMLAANVCASDFLHENKQPALFRVHEGPTPEKLAALRGFLAEFGLDLGGGDKPHAKDYAALLEKIKDRPDHGLLQTVMLRSLRQAIYSPDNKGHFGLAYEAYTHFTSPIRRYPDLLVHRGIKAVLLGEKLPAKGLAEIGAHCSMTERRADDATRDVDAWLKTYFMQDRIGDEYNGTVSAVTSFGMFVAIDDIFIEGLVHVSELGQDYFHYDQAKHMMLGERTGKKYRLGDRVRIKVMRADIETSKIDFSLVEQENSALDMQRAFAQSASEKKSSKPRSAKSRSGSKQK*