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SCNpilot_expt_300_bf_scaffold_621_22

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 51 / 55 BSCG 50 / 51 MC: 3 ASCG 12 / 38
Location: comp(21916..22155)

Top 3 Functional Annotations

Value Algorithm Source
AlgR/AgrA/LytR family regulatory protein RpfD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE03_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 87.2
  • Coverage: 78.0
  • Bit_score: 144
  • Evalue 3.30e-32
AlgR/AgrA/LytR family regulatory protein RpfD {ECO:0000313|EMBL:EIL97694.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s similarity UNIPROT
DB: UniProtKB
  • Identity: 88.5
  • Coverage: 78.0
  • Bit_score: 146
  • Evalue 2.10e-32
LytTR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 84.6
  • Coverage: 78.0
  • Bit_score: 141
  • Evalue 1.30e-31

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 240
GTGAACCTGCATGTGCACGGTCGCGACTACCCGCTGCGCAGCACCATGGCGGCGATCGAGGAGCGGCTGGACCCGGCGCGTTTCGTGCGCGTGCACCGCGGCTATTTCGTCAATCTCGACTACCTCGCCCAGATCGAGCCCTTGGATACCGGCGACGCCCGCCTGACCATGCGTGACGGTGCCACCATCCCCTGCAGCCGACGCCACCGTGCTGCCTTGCGCGAGCGTTTCGGCGGCTGA
PROTEIN sequence
Length: 80
VNLHVHGRDYPLRSTMAAIEERLDPARFVRVHRGYFVNLDYLAQIEPLDTGDARLTMRDGATIPCSRRHRAALRERFGG*