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SCNpilot_expt_300_bf_scaffold_539_2

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 51 / 55 BSCG 50 / 51 MC: 3 ASCG 12 / 38
Location: comp(1546..1830)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW35_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 92.4
  • Coverage: 92.0
  • Bit_score: 173
  • Evalue 1.00e-40
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhoda similarity UNIPROT
DB: UniProtKB
  • Identity: 92.4
  • Coverage: 92.0
  • Bit_score: 173
  • Evalue 1.40e-40
RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 91.4
  • Coverage: 93.0
  • Bit_score: 171
  • Evalue 1.40e-40

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 285
ATGTCCAAGGGGCAATCGTTGCAAGATCCGTTTCTCAATGCGTTGCGGCGCGAGCGTGTGCCGGTGGCCATCTACCTGGTCAACGGCATCAAGTTGCAGGGCACGGTCGAGTCGTTCGACCAGTTCGTGGTGCTCCTGCGCAACCAGGTCAGCCAGATGGTGTACAAGCACGCCATTTCCACCGTGGTGCCGAGTCGCAACGTGCGCATCGGCAATGGTCACGATGGCCACGAAGGCCACGATCACCAGGCCGATACTTCGGCAACCGTCGAAGCGGGCACTTGA
PROTEIN sequence
Length: 95
MSKGQSLQDPFLNALRRERVPVAIYLVNGIKLQGTVESFDQFVVLLRNQVSQMVYKHAISTVVPSRNVRIGNGHDGHEGHDHQADTSATVEAGT*