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SCNpilot_expt_300_bf_scaffold_357_29

Organism: SCNPILOT_EXPT_300_BF_Variovorax_67_44

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 14 / 38 MC: 2
Location: comp(29649..30230)

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZB7_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 193.0
  • Bit_score: 345
  • Evalue 4.10e-92
  • rbh
Variovorax paradoxus strain MEDvA23 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32041.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 193.0
  • Bit_score: 347
  • Evalue 1.10e-92
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 193.0
  • Bit_score: 345
  • Evalue 1.10e-92

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 582
ATGGCTACCAATCGCGAACGCACCGAAAGCACCCAGCTCGCCCTGCTAGAAGCCGCCCGCGCGCTCTTCGTCAGCAAGGGCTACGGCGACACCTCCACGCCGGAGATCGCCCTGGCGGCCGGCATCACGCGCGGCGCTCTGTACCACCACTTCGCCGACAAGCGCGACCTCTTCCGGCAGGTGCTTGCGCGCGAGGCGATGGCCGTGGCGGCCGACATCGAGGCCGCCACGCCCGAGCGGCTGGGCCCGCGCGAAGCCCTGCTCGAAGGCAGCGAGGCCTACCTGAACGCCATGACCGTGCCGGGCCGCACGCGGCTTTTGCTGGTGGACGGCCCTGCCGTGCTGGGCATGGCGGAAATCATGGCGATCGACGACGCCAACGCCGCGCACTCGCTGCGCCAGGGCCTCGCGCGCGCGGGCATGGGGCGCGGCGAAGTCTCGGTCGATGCGCTGTCGCAGTTGCTGTCGGCCGCCTTCGACCGCGCAGCGCTGGAAATCGACGCGGGCGCCGATGCGAAAGAAGTCCGCGCGGCGATGCGCTGGCTGGTGGAACAGGCACTGGGGCCCGAAAAGAAGCGCTGA
PROTEIN sequence
Length: 194
MATNRERTESTQLALLEAARALFVSKGYGDTSTPEIALAAGITRGALYHHFADKRDLFRQVLAREAMAVAADIEAATPERLGPREALLEGSEAYLNAMTVPGRTRLLLVDGPAVLGMAEIMAIDDANAAHSLRQGLARAGMGRGEVSVDALSQLLSAAFDRAALEIDAGADAKEVRAAMRWLVEQALGPEKKR*