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SCNpilot_expt_300_bf_scaffold_55_13

Organism: SCNPILOT_EXPT_300_BF_Novosphingobium_63_58

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(13000..13917)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat similarity UNIPROT
DB: UniProtKB
  • Identity: 73.1
  • Coverage: 301.0
  • Bit_score: 415
  • Evalue 7.10e-113
tRNA pseudouridine synthase B n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEK3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 73.1
  • Coverage: 308.0
  • Bit_score: 413
  • Evalue 1.50e-112
  • rbh
pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 73.4
  • Coverage: 305.0
  • Bit_score: 413
  • Evalue 7.10e-113

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGAGCGTCCATGGCTGGATCATTCTGGACAAACCGCTGGAGCTGGGCAGCACGCAGGCCGTCAGCGCGGTCAAGCGCAACCTGCGCGCGGCGGGTTATAACATGAAGCTGAAGGGCGGGATCAAGGTGGGCCATGGCGGCACGCTGGATCCGCTGGCCAGCGGGATATTGCCCATCGCGCTGGGCGAGGCGACGAAATTGACGGGGCGGATGCTGGATGCGTCCAAGACCTATGATTTCACGGTGAAGTTCGGCGAGGAGACCGAGACGCTCGACCTCGAGGGCAAGGTTGTGGCCACCAGCGATGTGCGCCCCATTGCGGCGGAAATCGCGGCGGTTCTGCCGTCCTTCACCGGGCCGATCGAACAGGTGCCGCCCGCCTATTCGGCGCTGATGATCGACGGGGTGCGCGCCTATGACCGCGCGCGCCGGGGCGAGGCGGTGGATATGCCCACGCGCGCGGTCACGATCCATGCGCTCGACCTGATCGACGCCGGCGAGGACTGGGCGACCCTGCGCGCCCATGTGTCGAAGGGCACCTATATCCGCAGCCTGGCGCGCGACATCGCGTTGGCGCTGGGCACGCGCGGGTCGGTAACGATGCTGCGGCGGCTCTCGGCGGGGCCGTTTACGCTGGATCACGCGATTTCGCTGGACTCCTTGAACGAAATCGGTCAGGGGGCGCCGCTTGGAACTAAACTTCTGCCGCTTGAGGCAGGGCTGGTCGACATCCCGGCTCTATCCCTCTCGCCCGAACAGGCAGGGGCGGTCCGTCAGGGCCGCGTTCTTTTCGGGCAGCCCTATCCCGATGGGCTTTATCTGGCGCGGCTGGGCGATGTGCCCGTCGCGTTGATGAGGCTCGAAGGGGGCTCGGCCAAGGTCGAGCGGGGGTTCAACCTTTCGGATGTCGCGGAGTAG
PROTEIN sequence
Length: 306
MSVHGWIILDKPLELGSTQAVSAVKRNLRAAGYNMKLKGGIKVGHGGTLDPLASGILPIALGEATKLTGRMLDASKTYDFTVKFGEETETLDLEGKVVATSDVRPIAAEIAAVLPSFTGPIEQVPPAYSALMIDGVRAYDRARRGEAVDMPTRAVTIHALDLIDAGEDWATLRAHVSKGTYIRSLARDIALALGTRGSVTMLRRLSAGPFTLDHAISLDSLNEIGQGAPLGTKLLPLEAGLVDIPALSLSPEQAGAVRQGRVLFGQPYPDGLYLARLGDVPVALMRLEGGSAKVERGFNLSDVAE*