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SCNpilot_cont_300_bf_scaffold_1453_12

Organism: SCNPILOT_CONT_300_BF_Nitrosospira_56_141

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: comp(9878..10462)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=58133 species="Bac similarity UNIPROT
DB: UniProtKB
  • Identity: 54.5
  • Coverage: 176.0
  • Bit_score: 199
  • Evalue 3.90e-48
2'-5' RNA ligase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHI7_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 52.8
  • Coverage: 178.0
  • Bit_score: 193
  • Evalue 2.60e-46
2',5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 50.3
  • Coverage: 177.0
  • Bit_score: 183
  • Evalue 4.40e-44

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Taxonomy

Nitrosospira sp. NpAV → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGGCGACGGAGGCCCTTGGGCAAGCTGGATATGCGGGGGAGGATATCATCCGGGTTTTTTTTGCGATATGGCCCGATGCCGCCGTCAGGAAGCAGTTGCTGGAAATGGCAAGCGGTTTGCAGCGGAATTCCGGTTGTACCGGCAGGAGAATGAAGGCGGAGAACATTCATCTCACCCTGGTATTCGTGGGAAACGTCGATCATGACGGGCTCGAGGCGTTGTGCCACGCAGCGGAAGGAATCGCGAGGACAGGCAGGCCATCTTTTGAACTGGTCATCCAGGAGACAGGCTATTGGAAGCGCAATCGCATTGCTTATGCCGCGCTGCATGAGATTCCTCCGGCGCTGAAAGAGCTGGTGGGCCAACTGGGGAAGGCGATCGAGGCCATCGGATATTCAATGGAAGCGCGGGCATACAAACCGCATATCACATTGATGCGTGATGCGGTCTGTCCGGCGCTGCACCGGCAGATAGAACCGGTCGTCTGGGAAGTGCGGGAGTGGCTGCTGGTCAGGTCGGAACAGACAAGAGAGGGTGTTGTCTATAGTCCTGTTGGCCGCTGGCTGCTTGGAACCCCTGAATAG
PROTEIN sequence
Length: 195
MATEALGQAGYAGEDIIRVFFAIWPDAAVRKQLLEMASGLQRNSGCTGRRMKAENIHLTLVFVGNVDHDGLEALCHAAEGIARTGRPSFELVIQETGYWKRNRIAYAALHEIPPALKELVGQLGKAIEAIGYSMEARAYKPHITLMRDAVCPALHRQIEPVVWEVREWLLVRSEQTREGVVYSPVGRWLLGTPE*