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SCNpilot_cont_300_bf_scaffold_2965_10

Organism: SCNPILOT_CONT_300_BF_Nitrobacter_62_12_partial

near complete RP 42 / 55 MC: 3 BSCG 42 / 51 MC: 2 ASCG 11 / 38 MC: 2
Location: comp(7947..8447)

Top 3 Functional Annotations

Value Algorithm Source
Collagen triple helix repeat n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QKJ6_RHOPT similarity UNIREF
DB: UNIREF100
  • Identity: 42.4
  • Coverage: 165.0
  • Bit_score: 118
  • Evalue 7.00e-24
Collagen triple helix repeat {ECO:0000313|EMBL:ABE39971.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.3
  • Coverage: 149.0
  • Bit_score: 119
  • Evalue 3.40e-24
triple helix repeat-containing collagen similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 165.0
  • Bit_score: 118
  • Evalue 2.00e-24

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 501
ATGCTTCCGAAGCTAGTCAGCGCCGCCGCGATCGCCGCCACCTGTTTCGCAGTCGCATGGCCGATCAGTGCATCCGCCGATATCTCCGTCACCAATGCCAGCATACGACGCGGGGATTTGGTGATCGAGGGACGAATCCGGCGCACGGGCGACCCCAACGTCGAAATCAAGATCAGCCCGGCCAAGACGGTGAAAGTCCAGAGCGCGGCGACGGGGGCGTTCAAATGGATGGGCCCAGAGTTTCCAACGACCTGCACCGTGACGATCACCTCCGGGTCCGAGACCCGCGACGCGGTGATCCAAAACTGCGGACCTGCCGGCCCGCCGGGCCCTGAAGGCCCCCCCGGACCCGCCGGATCAGCGGGGCCTGCCGGTCCTGCCGGCTCAACCGGTCCGGCCGGACCACCGGGACCTCCCGGTCCAGCCGGACTCGCTGGTCCTCCGGGACCTGTGGGACCCGCGGGTCCATCAGGATCTCCGCCGGCACCCAGGGCGAACTAG
PROTEIN sequence
Length: 167
MLPKLVSAAAIAATCFAVAWPISASADISVTNASIRRGDLVIEGRIRRTGDPNVEIKISPAKTVKVQSAATGAFKWMGPEFPTTCTVTITSGSETRDAVIQNCGPAGPPGPEGPPGPAGSAGPAGPAGSTGPAGPPGPPGPAGLAGPPGPVGPAGPSGSPPAPRAN*