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ACD2_14

Alias: ACD2_2142.87147.58

Search features with annotation key words

Displaying items 31-60 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_14_31
ACD2, Gracilibacteria, Bacteria

Not on your lists

47035..47283
DNA (249bp) protein (83aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions 55..77 Tax=ACD2
ACD2_14_32
ACD2, Gracilibacteria, Bacteria

Not on your lists

49135..49488
DNA (354bp) protein (118aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=115)
seg (db=Seg db_id=seg from=11 to=22)
transmembrane_regions 54..76 Tax=ACD2
ACD2_14_33
ACD2, Gracilibacteria, Bacteria

Not on your lists

49490..49942
DNA (453bp) protein (151aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=53)
seg (db=Seg db_id=seg from=41 to=53)
transmembrane_regions 13..32 Tax=ACD2
ACD2_14_34
ACD2, Gracilibacteria, Bacteria

Not on your lists

49942..50340
DNA (399bp) protein (133aa)
TerB (db=HMMPfam db_id=PF05099 from=8 to=109 evalue=3.2e-07 interpro_id=IPR007791 interpro_description=Heat shock protein DnaJ-like protein djlA)
TerB Tax=ACD2
ACD2_14_35
ACD2, Gracilibacteria, Bacteria

Not on your lists

50810..51040
DNA (231bp) protein (77aa)
50810..51040 + (rbs_motif=TAA rbs_spacer=7bp)
hypothetical protein Tax=ACD2
ACD2_14_36

Not on your lists

comp(51211..52014)
DNA (804bp) protein (268aa)
seg (db=Seg db_id=seg from=2 to=14)
Uncharacterized protein {ECO:0000313|EMBL:EKE29727.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD2_14_37
ACD2, Gracilibacteria, Bacteria

Not on your lists

52139..54565
DNA (2427bp) protein (809aa)
hypothetical protein (db=KEGG evalue=9.0e-18 bit_score=96.3 identity=34.68 coverage=20.8899876390606)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
N-acetylmuramoyl-L-alanine amidase-like (db=superfamily db_id=SSF55846 from=319 to=486 evalue=1.4e-26 interpro_id=IPR002502 interpro_description=N-acetylmuramoyl-L-alanine amidase, family 2 GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
no description (db=Gene3D db_id=G3DSA:3.40.80.10 from=322 to=484 evalue=4.5e-22 interpro_id=IPR002502 interpro_description=N-acetylmuramoyl-L-alanine amidase, family 2 GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
ACD2_14_38

Not on your lists

54619..55065
DNA (447bp) protein (149aa)
ATP-cone domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QX80_METTR (db=UNIREF evalue=2.0e-34 bit_score=148.0 identity=48.63 coverage=96.6442953020134)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=74 to=95 evalue=NA)
TIGR00244: transcriptional regulator NrdR (db=HMMTigr db_id=TIGR00244 from=1 to=146 evalue=2.4e-43 interpro_id=IPR003796 interpro_description=Ribonucleotide reductase regulator NrdR-like)
ACD2_14_39
ACD2, Gracilibacteria, Bacteria

Not on your lists

55135..55533
DNA (399bp) protein (133aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
transmembrane_regions 2..24 Tax=ACD2
ACD2_14_40
ACD2, Gracilibacteria, Bacteria

Not on your lists

55593..56558
DNA (966bp) protein (322aa)
primosomal protein N'
priA; primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.1.-] alias=ACD2_C00014G00040,ACD2_2142.87147.58G0040,ACD2_2142.87147.58_40 id=34535 tax=ACD2 species=Bacillus subtilis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
priA; primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.1.-] Tax=ACD2
ACD2_14_41

Not on your lists

comp(56623..58152)
DNA (1530bp) protein (510aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=313 to=335)
transmembrane_regions (db=TMHMM db_id=tmhmm from=355 to=377)
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=412)
transmembrane_regions (db=TMHMM db_id=tmhmm from=470 to=502)
ACD2_14_42
ACD2, Gracilibacteria, Bacteria

Not on your lists

58239..60152
DNA (1914bp) protein (638aa)
Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4C7_9CLOT (db=UNIREF evalue=4.0e-113 bit_score=412.0 identity=37.4 coverage=97.9623824451411)
rnr; ribonuclease R (EC:3.1.-.-)
rnr; ribonuclease R (EC:3.1.-.-)
rnr; ribonuclease R (EC:3.1.-.-)
ACD2_14_43
ACD2, Gracilibacteria, Bacteria

Not on your lists

60660..63569
DNA (2910bp) protein (970aa)
metal dependent phosphohydrolase (db=KEGG evalue=1.0e-09 bit_score=70.1 identity=46.0 coverage=9.48453608247423)
seg (db=Seg db_id=seg from=779 to=799)
seg (db=Seg db_id=seg from=419 to=432)
coiled-coil (db=Coil db_id=coil from=895 to=923 evalue=NA)
ACD2_14_44
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(63566..64759)
DNA (1194bp) protein (398aa)
coiled-coil (db=Coil db_id=coil from=273 to=294 evalue=NA)
PGBD-like (db=superfamily db_id=SSF47090 from=301 to=378 evalue=0.0026 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
PGBD-like (db=superfamily db_id=SSF47090 from=192 to=251 evalue=0.017 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
coiled-coil 273..294 Tax=ACD2
ACD2_14_45
ACD2, Gracilibacteria, Bacteria

Not on your lists

65070..66131
DNA (1062bp) protein (354aa)
NusA antitermination factor
NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=6 to=352 evalue=1.2e-94 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))
TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=1 to=353 evalue=9.4e-84)
NusA_N (db=HMMPfam db_id=PF08529 from=8 to=134 evalue=3.1e-28 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))
ACD2_14_46
unknown

Not on your lists


66327..66797
DNA (471bp) protein (157aa)
50S ribosomal protein L4
50S ribosomal protein L9 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBF8_9CLOT (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=34.27 coverage=88.5350318471338)
coiled-coil (db=Coil db_id=coil from=46 to=67 evalue=NA)
L9: ribosomal protein L9 (db=HMMTigr db_id=TIGR00158 from=6 to=154 evalue=5.1e-19 interpro_id=IPR020594 interpro_description=Ribosomal protein L9, bacteria/chloroplast GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD2_14_47
ACD2, Gracilibacteria, Bacteria

Not on your lists

66802..67200
DNA (399bp) protein (133aa)
Holliday junction resolvase YqgF
UPF0081 (db=HMMPfam db_id=PF03652 from=2 to=130 evalue=4.1e-21 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=132 evalue=1.3e-20 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.140 from=2 to=129 evalue=8.7e-16 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
ACD2_14_48
ACD2, Gracilibacteria, Bacteria

Not on your lists

67251..67955
DNA (705bp) protein (235aa)
uppS; undecaprenyl pyrophosphate synthetase
DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10291 from=2 to=234 evalue=2.5e-55 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
Prenyltransf (db=HMMPfam db_id=PF01255 from=6 to=232 evalue=1.2e-50 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
no description (db=Gene3D db_id=G3DSA:3.40.1180.10 from=2 to=233 evalue=5.7e-49 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
ACD2_14_49
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(68069..68452)
DNA (384bp) protein (128aa)
PAS domain-containing protein
CheY-like (db=superfamily db_id=SSF52172 from=4 to=123 evalue=1.1e-21 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=8 to=123 evalue=5.0e-18)
SENSOR HISTIDINE KINASE (db=HMMPanther db_id=PTHR23283:SF31 from=8 to=126 evalue=2.7e-16)
ACD2_14_50
ACD2, Gracilibacteria, Bacteria

Not on your lists

68639..69556
DNA (918bp) protein (306aa)
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=292 evalue=6.6e-12 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP domain-like 1..292 Tax=ACD2
ACD2_14_51
unknown

Not on your lists

69567..70031
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IMF3_9CHRO (db=UNIREF evalue=1.0e-08 bit_score=62.4 identity=35.42 coverage=90.9677419354839)
hypothetical protein (db=KEGG evalue=4.0e-08 bit_score=60.1 identity=33.33 coverage=90.9677419354839)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
ACD2_14_52
ACD2, Gracilibacteria, Bacteria

Not on your lists

70528..70992
DNA (465bp) protein (155aa)
NUDIX hydrolase
seg (db=Seg db_id=seg from=27 to=41)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=6 to=150 evalue=1.1e-13 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
8OXTPHPHTASE (db=FPrintScan db_id=PR01403 from=123 to=141 evalue=3.0e-12 interpro_id=IPR003563 interpro_description=7,8-dihydro-8-oxoguanine triphosphatase GO=Biological Process: DNA repair (GO:0006281), Molecular Function: 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity (GO:0008413))
ACD2_14_53
unknown

Not on your lists

71009..71452
DNA (444bp) protein (148aa)
MutT/nudix family protein n=2 Tax=Bacteria RepID=C3RRD7_9MOLU (db=UNIREF evalue=8.0e-18 bit_score=92.4 identity=38.76 coverage=85.8108108108108)
ADP-ribose pyrophosphatase
Nudix (db=superfamily db_id=SSF55811 from=6 to=140 evalue=4.0e-26 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=11 to=135 evalue=8.0e-18 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD2_14_54
ACD2, Gracilibacteria, Bacteria

Not on your lists

71590..73044
DNA (1455bp) protein (485aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=18 to=31)
seg (db=Seg db_id=seg from=463 to=482)
transmembrane_regions 13..35 Tax=ACD2
ACD2_14_55
ACD2, Gracilibacteria, Bacteria

Not on your lists

73049..73681
DNA (633bp) protein (211aa)
seg (db=Seg db_id=seg from=12 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD2
ACD2_14_56
ACD2, Gracilibacteria, Bacteria

Not on your lists

73907..74317
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=27 to=38)
seg (db=Seg db_id=seg from=58 to=76)
seg (db=Seg db_id=seg from=100 to=110)
seg 27..38 Tax=ACD2
ACD2_14_57
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(75450..75941)
DNA (492bp) protein (164aa)
seg (db=Seg db_id=seg from=135 to=162)
Nudix (db=superfamily db_id=SSF55811 from=9 to=154 evalue=2.5e-18 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=12 to=135 evalue=2.4e-12 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=19 to=137 evalue=6.5e-12 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD2_14_58
unknown

Not on your lists

comp(75966..76964)
DNA (999bp) protein (333aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 RepID=C3GAF7_BACTU (db=UNIREF evalue=4.0e-21 bit_score=105.0 identity=25.69 coverage=95.4954954954955)
Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 RepID=C3GAF7_BACTU Tax=ACD2
ACD2_14_59
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(77067..77390)
DNA (324bp) protein (108aa)
77067..77390 - (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_14_60
ACD2, Gracilibacteria, Bacteria

Not on your lists


comp(77406..78035)
DNA (630bp) protein (210aa)
50S ribosomal protein L25
seg (db=Seg db_id=seg from=185 to=209)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=2 to=190 evalue=1.4e-44 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
ctc_TL5: ribosomal protein L25, Ctc-form (db=HMMTigr db_id=TIGR00731 from=4 to=181 evalue=1.4e-33 interpro_id=IPR001021 interpro_description=Ribosomal protein L25 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: 5S rRNA binding (GO:0008097))
Displaying items 31-60 of 70 in total

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